Gene detail

Detailed information of g9647.t1 in Montipora capitata

Genomic Location: Sc0000255:374760...387306
NR annotation: XP_029202780.2, hepatocyte growth factor-regulated tyrosine kinase substrate-like isoform X2 [Acropora millepora]
Species Montipora capitata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

g9647.t1

atgcaggctccagagtgggctgagggtgatgtttgtcacatgtgcagagtcaagttttcaacatttcaaagacagcaccactgcagaaactgtggtcaagtattttgccagaagtgttcctcaaaagtctctataattcctcagtatggtatagaaagagaagtaagggtctgtgatccatgcttctacaaacttaacccctcagctagcaaaaacgaagaaggctctaagaagtcagacaaagtatcaacagacagtgatttgcctccagagtacctcagcagttcactgagccgagaatcacaggttgacgacggagtagcctccgagacatcatttgaagtgtcagatgctatggtaaaaactttccagggaaacgttgtaatgttgctggatagaatgcagaaggtgtcagcccagggaaagcacattgcaatggatgctaccgcacagtctttgttccaaactgtaagtgctatgcacccacagatactcagactcattgaactacaagaagaagagaaagccaagtatgaagcccttcatgtcaaacttggtcttgtgcgcgaggctcgctcgtctttagatgagatgcgaaaacaacatcgcgagaaagtacgacagcaggagctggaacaggatacactgcgacgattgcaaatagaagagaaactagagctgatgcgtcagcagaaagctgaatacctggcctatcaacaacgattacaggcggagagacaagcaaccattgaacaacaacaacagcagcagcaaagggttcaataccaaagaccaatacaaatgcaacagtaccactacactgctggtggagattccagtccctactcttctttaaattacacaccgataactttggccagttcacagccctataccccacagaatgcacctgcatcttacacctctgctgtgccacagggttatcaggtgcctgatgctcctctgccatcacagtatgcagcacatcccccttctagtgggttcttgcagactccccctaccaatttaatgcccttaaggaacgatggaccaacatctcaaatggaattccagcctcagccaagttcactagagtaccacccacccacctatgcttctcaggttccacctgatcagggttcagcttctcttcagccccgtagccttggggggcctcccccagttcctactgctcccgcgcaagtgacagctcaagcaccaccccctcagtatgctcaggtcacatcgcagcatccaagctctcaacagccatatggccaactgggaggccaacacccaccagcacaaacccaaccacagaatctcatccctggggcagcacccactgattttacagggcaacctcagatcaacccagtggcaccatctcaaagtcacctccagtattctcaacagacacagttaagcagtactagaccgcatgtgccagaagtcaccccaccttcccagttaaccaacttgccacaaacacagcccttacagcaaggtattccaacacagtatgctcatccaggagcacgggacacacagcccaaaccacagccctaccagtctcctcaaagaaatggttttcccccagtagatgcctctcagggacaaccaccattgttttcatctggttcaatgcactcacaattgaacgttggtcaaccatctgtccatccctcatttcaacaaggacaaccaggcgtccactcactccaaggacctacaatgcagcaaggactcccaatgcagcaggggcctcctttgcaacaaggggcccctttacaacagggccctccaatgcaacaggtttatgaacctcagcaacaacagccccaacaattaacacctcaacaaggatatcaacctggaccaggccaagggctacccagtcagcaacagccaccatcacagtactatgggtcagcaccaccaccccagcaatcaaacccagccccacagagacagctgtctgatttagaactgatatcatttgactga

Transcript

g9647.t1

ATGCAGGCTCCAGAGTGGGCTGAGGGTGATGTTTGTCACATGTGCAGAGTCAAGTTTTCAACATTTCAAAGACAGCACCACTGCAGAAACTGTGGTCAAGTATTTTGCCAGAAGTGTTCCTCAAAAGTCTCTATAATTCCTCAGTATGGTATAGAAAGAGAAGTAAGGGTCTGTGATCCATGCTTCTACAAACTTAACCCCTCAGCTAGCAAAAACGAAGAAGGCTCTAAGAAGTCAGACAAAGTATCAACAGACAGTGATTTGCCTCCAGAGTACCTCAGCAGTTCACTGAGCCGAGAATCACAGGTTGACGACGGAGTAGCCTCCGAGACATCATTTGAAGTGTCAGATGCTATGGTAAAAACTTTCCAGGGAAACGTTGTAATGTTGCTGGATAGAATGCAGAAGGTGTCAGCCCAGGGAAAGCACATTGCAATGGATGCTACCGCACAGtcTTTGTTCCAAACTGTAAGTGCTATGCACCCACAGATACTCAGACTCATTGAACTACAAGAAGAAGAGAAAGccAAGTATGAAGCCCTTCATGTCAAACTTGGTCTTGTGCGCGAGGCTCGCTCGTCTTTAGATGAGATGCGAAAACAACATCGCGAGAAAGTACGACAGCAGGAGCTGGAACAGGATACACTGCGACGATTGCAAATAGAAGAGAAACTAGAGCTGATGCGTCAGCAGAAAGCTGAATACCTGGCCTATCAACAACGATTACAGGCGGAGAGACAAGCAACcattgaacaacaacaacagcagcagcaaaGGGTTCAATACCAAAGACCAATACAAATGCAACAGTACCACTACACTGCTGGTGGAGATTCCAGTCCCTACTCTTCTTTAAATTACACACCGATAACTTTGGCCAGTTCACAGCCCTATACCCCACAGAATGCACCTGCATCTTACACCTCTGCTGTGCCACAGGGTTATCAGGTGCCTGATGCTCCTCTGCCATCACAGTATGCAGCACATCCCCCTTCTAGTGGGTTCTTGCAGACTCCCCCTACCAATTTAATGCCCTTAAGGAACGATGGACCAACATCTCAAATGGAATTCCAGCCTCAGCCAAGTTCACTAGAGTACCACCCACCCACCTATGCTTCTCAGGTTCCACCTGATCAGGGTTCAGCTTCTCTTCAGCCCCGTAGCCTTGGGGGGCCTCCCCCAGTTCCTACTGCTCCCGCGCAAGTGACAGCTCAAGCACCACCCCCTCAGTATGCTCAGGTCACATCGCAGCATCCAAGCTCTCAACAGCCATATGGCCAACTGGGAGGCCAACACCCACCAGCACAAACCCAACCACAGAATCTCATCCCTGGGGCAGCACCCACTGATTTTACAGGGCAACCTCAGATCAACCCAGTGGCACCATCTCAAAGTCACCTCCAGTATTCTCAACAGACACAGTTAAGCAGTACTAGACCGCATGTGCCAGAAGTCACCCCACCTTCCCAGTTAACCAACTTGCCACAAACACAGCCCTTACAGCAAGGTATTCCAACACAGTATGCTCATCCAGGAGCACGGGACACACAGCCCAAACCACAGCCCTACCAGTCTCCTCAAAGAAATGGTTTTCCCCCAGTAGATGCCTCTCAGGGACAACCACCATTGTTTTCATCTGGTTCAATGCACTCACAATTGAACGTTGGTCAACCATCTGTCCATCCCTCATTTCAACAAGGACAACCAGGCGTCCACTCACTCCAAGGACCTACAATGCAGCAAGGACTCCCAATGCAGCAGGGGCCTCCTTTGCAACAAGGGGCCCCTTTACAACAGGGCCCTCCAATGCAACAGGTTTATGAACCTCAGCAACAACAGCCCCAACAATTAACACCTCAACAAGGATATCAACCTGGACCAGGCCAAGGGCTACCCAGTCAGCAACAGCCACCATCACAGTACTATGGGTCAGCACCACCACCCCAGCAATCAAACCCAGCCCCACAGAGACAGCTGTCTGATTTAGAACTGATATCATTTGACTGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q0V8S0	Hepatocyte growth factor-regulated tyrosine kinase substrate OS=Bos taurus OX=9913 GN=HGS PE=2 SV=1
Q99LI8	Hepatocyte growth factor-regulated tyrosine kinase substrate OS=Mus musculus OX=10090 GN=Hgs PE=1 SV=2
Q9JJ50	Hepatocyte growth factor-regulated tyrosine kinase substrate OS=Rattus norvegicus OX=10116 GN=Hgs PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003104 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01363 all species →	FYVE	FYVE zinc finger	Domain	Interproscan
PF12210 all species →	Hrs_helical	Hepatocyte growth factor-regulated tyrosine kinase substrate	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR017455 all species →	Domain	Zinc finger, FYVE-related	Interproscan
IPR000306 all species →	Domain	FYVE zinc finger	Interproscan
IPR017073 all species →	Family	Hepatocyte growth factor-regulated tyrosine kinase substrate/VPS27	Interproscan
IPR011011 all species →	Homologous_superfamily	Zinc finger, FYVE/PHD-type	Interproscan
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR024641 all species →	Domain	Hepatocyte growth factor-regulated tyrosine kinase substrate, helical domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46275 all species →	HEPATOCYTE GROWTH FACTOR-REGULATED TYROSINE KINASE SUBSTRATE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0046872 all species →	Molecular Function	metal ion binding	Interproscan
GO:0005769 all species →	Cellular Component	early endosome	Interproscan
GO:0031623 all species →	Biological Process	receptor internalization	Interproscan
GO:0032456 all species →	Biological Process	endocytic recycling	Interproscan
GO:0043130 all species →	Molecular Function	ubiquitin binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K12182	HGS, HRS, VPS27; hepatocyte growth factor-regulated tyrosine kinase substrate	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.