Gene detail

Detailed information of g9651.t2 in Tripedalia maipoensis

Genomic Location: scaffold_6:16262849...16283711
NR annotation: no NCBI-NR hit recorded
Species Tripedalia maipoensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

g9651.t2

ATGGTTGCTGGACGGCACAAGGGAGGAAACAAAGAACCACCAGGTCCTTTAATGGATCCATTAGGTCCTGGTATTGGTCCAGGTCCTCGGTTAGGTCCAGGTCTTGGACCAGGCCCAAGAATGCCACTTGACTTTGGTGGCCCAAGATTTCCGCCTCCTCTTGGACCCCCTGATCGCTTTGGACCCCTAGATCGTTTTGGGCCACCAGATCGGTTTGGTCCTCCTGAAAGATTTGGACCACCTGATAGGTTTGGGCCACGTGATCCCTTTGGACCACCTGACAGATTTGGGCCACCAGATCGATTTGGACCTAGAGATGGACCAAGACCTCTAATGGAAGACCTGGACAGACTAGAATTTGAGAGAAGGGAGTTTCATCGCAGGGAGATGGAGCGGATGGAATTTGAACGGCACATGGAATTTGAACACAGGGAGATGGAGAGAAAAGAGTTTGAAAAGAGAAAAATGGAGAGCTCAGGTGGGAAGTCAAAAAAGGAGGACAAAAAAGATAAGAAAGATAAGAAGGACAAGCGAGAGTCTGATGGCCCAAAGCCACTGTTTGCAGAGCCAGTGGGGCCACCTGGATTACCACCTTCCCCATTTGGACTTCATGGACCAAGAGGACCTCATGGGCCTCCGGGACCAATGGGGCCACTTGGACCTCTGGGAATGCATGGCCCTCATGGACCACCTGGGCCCATGGGTATGCGAGGTCCTCCTGGTCCACTTGGACCACATGGTCCCCCAGGACCTTTGGGTATGCATGGCCCATCAGGGCTACCACTTGGCCCCCGCCCTATGGGACCTATGGGGCATGCAGGACCATTTGGAGCCCCAGGACCAAGGTTTCAAGGTGGTCCATCAGGCCCGGTTATGTATTCAAAGAACAGTGCATCTGGAGGTCATGACCATAAGAGTGGACGAGGACGCTTTGACCACTTGAAGAAGCCCCTGAAGAGTAGTGGATCTAGCAAAAGCAAGGAGAATGCAAAAGAAATCAAAAGTGAACCTAAAGAAACAGCAGTTGAAGTAAAGGAAGAAGAGTCAGATGAAAGTGAGGTTGATGAGGACAAACTGCTTGCTAGTGATAACGAAGACGGTGACGAGCCTGGTAGTCAGGAGAAAGATGACGTGAGCAGTCACTCTAAGAAAGACAGCTTAGGCTCAACACCCAAAGACGATGCCACACCAACTGCTGACGACGAACGCAGGGAGGAGACCCCCGTGGCAGTGAAAAGAGAACCCACCCCTGACAGAAAGGTCAAAGTGGAAAGCTCTGTGTCTAAAGTGAAAAATGATTCGCCGGCCAACCGTGATCGACCACAAGACAAGGGTCCAGGTAGAAACTGGAAGGACAAACGAAATAGGAATTTCAGTAACGCACGGAATGATAATTTCAGACAACAAAGCCATGCACAACAGCACCAACATCAACAGCAGCAACAACAGCACCAACAACAGCACCAACAACAGCACCAACAACAGCACCAACAACAGCTAGGTGGCCCTCGCCCTCCATTTTATCAAAATCAGCCGCCCCCTTCCACAGGGGGTAATGCTCCACCCTCACTTCCTGGTCCGGGGATGCAGCAGACTATGCCACGCCTACATGGTCCGCCAGGACATGGACCTGGATCGGGACCAGGACCCGGACCAATGCATCCGATGGGACCTGGTCCTATGCTAGGACCTCCCCGTGGACCACCTTCAGGTCAGGTACCGGGTCCTATGCCAGGGCCAGGACATCCTGGTGGACCCGGGCTTCCACCAGGACCTGGTCACCCCCCAGGAGGTGGGCCACCTGGTGCACCACACGTATCAGGGCATGGCTTAGTTCACGGGCCAGGACAAGGGCCTCTCCCTCCTCCTGGGCAGGGACCTGTAGGAATGCCTGCCCAGGGCCCTGGTGTTAATCCGGGACAGGTTATGCATGGAGGGCCCCTCTACCCACCACAAGGAGCCCAGATGCAGGGGCCTCCCAGTGGAGGGATGGGCCCGCCATCTTCAGGGCCGGCTCCGCCATTTGGTGGTACCCCATATCCTCAGCAGCCTCCTATGCCACGACCTGGAATGCCCGAAAATTCTCCTGGTGTGCGGCCCTCTGCTCAGGGGCCTGCCATGATGGGCCCTAGCCCTGGTCCGCCCCCTGTAGGCTTTAGGCCGCCGGTTGCACCTCAGGTGCCTATGGATCCGATGCAAAGATTTCCGCGCCCAGAAATGGACCGTCAGCTGCTGCCGCCGTCTTCGTCAGTAAATGTCATGGTATCCACCGTCATCGGTTCACCAGCTGTGTCGCAGCAACCAGTTGCGATCCCACCAAAGAACATACACATCAACCCACATTTTCGGCCTAACAGGCCCGATCTTGTGCAAAACTCAATGGCTTCTCCGATGCCTGTGCCAAGCATGTCAACCTTGGGACCGCGACCGGCAGCGGGGCCAAGCGTCGTTCTCAGACAAGACCTTGGTAGTCAAGGGCCCATGGCAAACATGCAGCCCGCCAGGCCTCCCATGCCAGGAACCGCTGAAGTGCATCCGCGAATGCCTCCTGGTATTCAGACGCCCGGTATTCAACCTCGACTTACTCCAGTGCACAATGTCTCGACGCCTAGTTTTGGACAGATGAGGCCTGGCGATGGTCTACCCCACCCTCAATTGCAAGACCCCATGTCGAGTAGACACCTTTCAGCGGGCGTCACTGGATCGGGTCATCCCGGTATAGCGCCATCACCCAACTCTTCCCTTCAGATCATGGGTCAGGGTCCAATGCAAGGTCAGGGGTTATCTTCAATGGGTCAAAGTGGACTGGGCATCAATCAAGCCGGCATTTCACCCGGCTTGTCTGCGAACGATCGTATTGTCGTCGGCGATAGGGTCATTGTACCTGGAAGCCAGCATAGTCAATTGCAGACTGGACAAATGTTCGGGAGTACGTCAATGAGTGGTAGTATGAGCGGGAGCCTCCTACATGGATCAGGTAGCTTTACGGGACTGGCGGGCGGCAACGCCTTGTCGGGCCAGCAGCCGCCCCAAAGCCAGCATGAACTAGAGCGAAGGCTCTACGAAGCACAACTTATGCGGCAACAAGAACAAATTCGACAGCAAGGTCTCCAGATGCGTGGAGAGATTGCGAACTACATGTCCACCAGGAGACAACACTCTGCGAAGGAGAAGAGTCGACGGAGGAGATACAGCGAGCGAAGCGCAAGTTATGGAAGCTCTGCTTCGAGATCCAGGTCTAGATCAAGGTCAAGGTCATGGACGAGGTCACGGTCTGGGTCGAGATCGCGTTCTGGATCAATGTCCAGGTCAAGGTCAAGATCTCTCTCTCCCTCCAGGTCAAGATCCTTATCCAGATCTCTCTCAAAGTCTTTGTCACGGTCCTGGTCACGGTCTCGATCTTTGTCGCCGTCGAGGTCCAGATCCAGATCCAAGTCGCTTTCCCCTCCGAAAAAAGTGGAGGCAAAGCCCAGGACACACAAAGTGGAGAAGCACAGGGAAAGGGACCACGACCGCCGACCGGTGGCCCCCGAGAGAATAGTGGAACCACCCAGGCCAAAGGAAAACGCCGCGTTCAAAGAGAGGGAAAAAGAGAAGGAAAGGGAGAGAGAAAGAGAGCGCGAGCGCGAGAGAGAACATAGGGAGCGGATCAAGCAGCGGGAGAAGGACAAAGAGCGAGAGAAGGAGAGGGAGCGCGAGCGTGAAAGGGAACGAGAGAGGGAAGAGAAAGAGCGAGAGAGAGAGAAGGAGAGGGAGAAACAGCTGCAACAGCAGGAGCGACGATTCCGCGAGGAGGCGAACGCAGAGAAGAACCGCGCGAGAGAAAGGCAGAGAGAGCGTGATAAGCCCAAGAAGGAGGAGCAGCACGGCCGTGGGCGGGGAAGGCAAGAAACCCCTCGGAGTGAGCGTGACCGCGAGAAAGAGAGAGTGCCAAACAAACGACGCAGGGAGGAGCACCCCCACGTGGAGCATGGACGTGATCGCCGGAGCACAGAGAGCGGCACAAGGAGGACACAGCCAAGCCCCGAGCAGAAGTCGCGCCGTGAGAGCACCAAGAGGGAAAGCAGTAAGAGTTCAAGAAGCGAGGGTAGCGCCGAACGAAAGGTCTCCAATAAGATCATCATCGGAAATTTATCATCGTCAACAACCGAGCGAAAGTTGCGGGCGATTCTGAGCGTAGTCGGTGCCATTGAGGCCATCAAGGTATCTCAGTCAAGGCACAAGGCTCTGGTGGCCTTTGCAAAGAATGACCAGGCACTTGCCTGCCGCAGACAGTTTCATCGGGCGCTTATAGATAACAGTCACGTGACTGTGGAGTTTGCATGA

Transcript

g9651.t2

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076 all species →	RRM_1	RNA recognition motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000504 all species →	Domain	RNA recognition motif domain	Interproscan
IPR012677 all species →	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR035979 all species →	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR053210 all species →	Family	Ankyrin repeat domain-containing protein 12	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24149 all species →	ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN 12	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0005654 all species →	Cellular Component	nucleoplasm	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for g9651.t2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.