Gene detail

Detailed information of g9653.t1 in Montipora capitata

Genomic Location: Sc0000256:36783...65289
NR annotation: XP_029185871.2, dynamin-1-like protein [Acropora millepora]
Species Montipora capitata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

g9653.t1

atgcaagttcagcacaaaacgctcaagtcattcttgctatgcgtcacttacaagcctcctgattgtaatgttgcctgcttgaaagactttagggaccgttacacacaagcgcttgtttacggcctacctattctagtggtcggagatctcaactgtgacttgcttgttaattcttcaaactcaagaacattaaacaacttgtgtacaagtctgaatatgaagcagcttattacccagctcacaagagtgacagaaatatctaaaactctgattgatgtcatttttacttcaaagccggcaataattgtggatagcggtatagtggagactcacttcagtgatcactatttagtctttgctgtgttaaatctaaggatgcccaaaccaccggctgcttacgttgtcgctaggagctataagtattatgatcgtcagagctttttgagcgacctaaacaagatcccttggtatgaagtcattttgtctgataatgtaaatgagaaactgctccatttcaatgaagtctttttccgggttttggataatcatgcacctattaaggaaatacaaatcaaacatcggagatgtccatttataaatgaagagatcaaagagaaaatggcaaaaagagatcaagctcataaaatcgcacgagagacgggtgctcttgtggattggcagtattatcgagactgtcgtaatgatgttaagacggtattacgcgaggcggagaaggagtatgtccagaatgagattaaaaagaatcagagctctagtgaacggtggaaggtgatacggaattgtataccaactagggagacgtcgcgtccagcttattctagggatatgaaagaacttgcgacggaatttaatgaattctttacggagcttataccagttattaacaaacttcaagatgtgtttaatactgtgggaacagaggctattcagctgcctcagatcgtggtagttggcgctcagagtagtggaaagagttcagttcttgaaaaccttgttggaagagactttctacccagaggatctggggttgtcaccagacgaccactcattctccagctagtccatacaccacccaaaaccaaaacaatcagttcaaagaagaccagtaaggagaggcaaccaaaggcggaggaagatgaagatgctgatgcttatttttcagatgatgaaggagatgcatctgagaaagaaaacgaggagccagaggagtggggaaaatttttgcatttgaaagagaggaaactgacagacttcgatgaaatttgtgaagaaatagaacgtgaaactgaaagggtcactggaagcaacaagggtatttcaagtgagcctatcagactcaaaatttattcacctagggtgctgaatttaactttggttgatcttcctggtgtcacgaaggttcctgttggagatcaaccactggatattgagcatcaaatacgtcatctcattctacaatacatcagtaatcctaatagtattatccttgctgttacacctgccaacattgaccttgctacatcagaagctctcaagattgctagagaagttgatccagatggaaacaggacacttgcagtttgtaccaagttggaccttatggaccatggaactgatgcgttagacatattatatggaagagttattcctgtcaaacttggaatcataggagtgatgaaccgcagtcaacttgatataaacaataaaaagaccatacaagcagcccttagagatgaagcgttgttttttcaaaagaattatcctgcattagcatctcgaaatggtactccatttctggcacgaaccctcaacaagcttttaatgcaccatattagaaattgtctacctgagctgaagtcacgtgtcaatacgatgacgtcacagtatcagcatttacttcaaagttacggggaacctgtggaagacaagggtccaatgctacttcagcttataacacggtttgcttcatcttactgtgcgatcattgaaggaacagcacgggatatcgaaaccacagagctatgtggaggagctagaatatgctacattttccatgatatctttggccggacattagaaattatggacgcaatggaaggcctggccacgagagatattctcactgctattagaaatgctacgggtcctcggccagcattgtttgttccagagatttcatttgaactgctcgtcaagagacaaatccgcagattggaagagcccagtctccgctgcgtggaactcgttcacgaggagatgcaacgcattgttcagcatgcatttagtcaggtaatggaggtaaagagatttccgcgtcttcatgacaagatagttgaagttgttactaaccttttgcagcgtcgtcttccctccacaaacgaaatggttgaaaacctggtgcaaattgaactgtcttatatcaacacaaatcatccggactttacagatggtgcttctcttgtgtccgccattacaagtaaccacgaaatggagcgcaaacgtcttggaaagttagcccacaacgctgtgacaaatggtcctttagagggtgttcgttcccaaacgtcaactccggatgcaagtcccgtccatcgtccagacgcaagtgtaaacagttcctttggtcccagcgctcccgcagataaaaatccagtggcctcggtttcaggtggaggcctgatgtcatgggtctctggcatccgtaaccccggatcccaagctaacgcggacaaaacgaacgctgtggttggaccgagcaagtcagctacggaagaactggcgttgccatcaacattcaggcaaagaggtttaacggatagagagcagatggattctgatattatccgtaagctcatcaagtcgtatttcgtgattgttaggaaatcaattcaagatagtgtccccaaggccataatgtgcttcttggtcaattttgttaaggagagaatacaaagtgaactggtggagaaactatataagagtgaaatttttgacaggcttctagaggaagccgagcaaatgcacatcaagagaaaagaagcgacagaaatgttgaaggcgctgcaaagagccgcccatatcatcagcgaagtcagagatacgcacatttggtag

Transcript

g9653.t1

ATGCAAGTTCAGCACAAAACGCTCAAGTCATTCTTGCTATGCGTCACTTACAAGCCTCCTGATTGTAATGTTGCCTGCTTGAAAGACTTTAGGGACCGTTACACACAAGCGCTTGTTTACGGCCTACCTATTCTAGTGGTCGGAGATCTCAACTGTGACTTGCTTGTTAATTCTTCAAACTCAAGAACATTAAACAACTTGTGTACAAGTCTGAATATGAAGCAGCTTATTACCCAGCTCACAAGAGTGACAGAAATATCTAAAACTCTGATTGATGTCATTTTTACTTCAAAGCCGGCAATAATTGTGGATAGCGGTATAGTGGAGACTCACTTCAGTGATCACTATTTAGTCTTTGCTGTGTTAAATCTAAGGATGCCCAAACCACCGGCTGCTTACGTTGTCGCTAGGAGCTATAAGTATTATGATCGTCAGAGCTTTTTGAGCGACCTAAACAAGATCCCTTGGTATGAAGTCATTTTGTCTGataatgtaaatgagaaacTGCTCCATTTCAATGAAGTCTTTTTCCGGGTTTTGGATAATCATGCACCTATTAAGGAAATACAAATCAAACATCGGAGATGTCCATTTATAAATGAAGAGATCAAAGAGAAAATGGCAAAAAGAGATCAAGCTCATAAAATCGCACGAGAGACGGGTGCTCTTGTGGATTGGCAGTATTATCGAGACTGTCGTAATGATGTTAAGACGGTATTACGCGAGGCGGAGAAGGAGTATGTCCAGAATGAGATTAAAAAGAATCAGAGCTCTAGTGAACGGTGGAAGGTGATACGGAATTGTATACCAACTAGGGAGACGTCGCGTCCAGCTTATTCTAGGGATATGAAAGAACTTGCGACGGAATTTAATGAATTCTTTACGGAGCTTATACCAGTTATTAACAAACTTCAAGATGTGTTTAATACTGTGGGAACAGAGGCTATTCAGCTGCCTCAGATCGTGGTAGTTGGCGCTCAGAGTAGTGGAAAGAGTTCAGTTCTTGAAAACCTTGTTGGAAGAGACTTTCTACCCAGAGGATCTGGGGTTGTCACCAGACGACCACTCATTCTCCAGCTAGTCCATACACCacccaaaaccaaaacaatcagTTCAAAGAAGACCAGTAAGGAGAGGCAACCAAAGGCGGAGGAAGATGAAGATGCTGATGCTTatttttcAGATGATGAAGGAGATGCATCTGAGAAAGAAAACGAGGAGCCAGAGGAGTGGGGAaaatttttgcatttgaaagagAGGAAACTGACAGACTTCGATGAAATTTGTGAAGAAATAGAACGTGAAACTGAAAGGGTCACTGGAAGCAACAAGGGTATTTCAAGTGAGCCTATCAGACTCAAAATTTATTCACCTAGGGTGCTGAATTTAACTTTGGTTGATCTTCCTGGTGTCACGAAGGTTCCTGTTGGAGATCAACCACTGGATATTGAGCATCAAATACGTCATCTCATTCTACAATACATCAGTAATCCTAATAGTATTATCCTTGCTGTTACACCTGCCAACATTGACCTTGCTACATCAGAAGCTCTCAAGATTGCTAGAGAAGTTGATCCAGATGGAAACAGGACACTTGCAGTTTGTACCAAGTTGGACCTTATGGACCATGGAACTGATGCGTTAGACATATTATATGGAAGAGTTATTCCTGTCAAACTTGGAATCATAGGAGTGATGAACCGCAGTCAACTTGATATAAACAATAAAAAGACCATACAAGCAGCCCTTAGAGATGAAGCGTTGTTTTTTCAAAAGAATTATCCTGCATTAGCATCTCGAAATGGTACTCCATTTCTGGCACGAACCCTCAACAAGCTTTTAATGCACCATATTAGAAATTGTCTACCTGAGCTGAAGTCACGTGTCAATACGATGACGTCACAGTATCAGCATTTACTTCAAAGTTACGGGGAACCTGTGGAAGACAAGGGTCCAATGCTACTTCAGCTTATAACACGGTTTGCTTCATCTTACTGTGCGATCATTGAAGGAACAGCACGGGATATCGAAACCACAGAGCTaTGTGGAGGAGCTAGAATATGCTACATTTTCCATGATATCTTTGGCCGGACATTAGAAATTATGGACGCAATGGAAGGCCTGGCCACGAGAGATATTCTCACTGCTATTAGAAATGCTACGGGTCCTCGGCCAGCATTGTTTGTTCCAGAGATTTCATTTGAACTGCTCGTCAAGAGACAAATCCGCAGATTGGAAGAGCCCAGTCTCCGCTGCGTGGAACTCGTTCACGAGGAGATGCAACGCATTGTTCAGCATGCATTTAGTCAGGTAATGGAGGTAAAGAGATTTCCGCGTCTTCATGACAAGATAGTTGAAGTTGTTACTAACCTTTTGCAGCGTCGTCTTCCCTCCACAAACGAAATGGTTGAAAACCTGGTGCAAATTGAACTGTCTTATATCAACACAAATCATCCGGACTTTACAGATGGTGCTTCTCTTGTGTCCGCCATTACAAGTAACCACGAAATGGAGCGCAAACGTCTTGGAAAGTTAGCCCACAACGCTGTGACAAATGGTCCTTTAGAGGGTGTTCGTTCCCAAACGTCAACTCCGGATGCAAGTCCCGTCCATCGTCCAGACGCAAGTGTAAACAGTTCCTTTGGTCCCAGCGCTCCCGCAGATAAAAATCCAGTGGCCTCGGTTTCAGGTGGAGGCCTGATGTCATGGGTCTCTGGCATCCGTAACCCCGGATCCCAAGCTAACGCGGACAAAACGAACGCTGTGGTTGGACCGAGCAAGTCAGCTACGGAAGAACTGGCGTTGCCATCAACATTCAGGCAAAGAGGTTTAACGGATAGAGAGCAGATGGATTCTGATATTATCCGTAAGCTCATCAAGTCGTATTTCGTGATTGTTAGGAAATCAATTCAAGATAGTGTCCCCAAGGCCATAATGTGCTTCTTGGTCAATTTTGTTAAGGAGAGAATACAAAGTGAACTGGTGGAGAAACTATATAAGAGTGAAATTTTTGACAGGCTTCTAGAGGAAGCCGAGCAAATGCACATCAAGAGAAAAGAAGCGACAGAAATGTTGAAGGCGCTGCAAAGAGCCGCCCATATCATCAGCGAAGTCAGAGATACGCACATTTGGTAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O00429	Dynamin-1-like protein OS=Homo sapiens OX=9606 GN=DNM1L PE=1 SV=2
Q8K1M6	Dynamin-1-like protein OS=Mus musculus OX=10090 GN=Dnm1l PE=1 SV=3
Q2KIA5	Dynamin-1-like protein OS=Bos taurus OX=9913 GN=DNM1L PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001302 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00350 all species →	Dynamin_N	Dynamin family	Domain	Interproscan
PF02212 all species →	GED	Dynamin GTPase effector domain	Family	Interproscan
PF01031 all species →	Dynamin_M	Dynamin central region	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019762 all species →	Conserved_site	Dynamin, GTPase region, conserved site	Interproscan
IPR045063 all species →	Domain	Dynamin, N-terminal	Interproscan
IPR020850 all species →	Domain	GTPase effector domain	Interproscan
IPR001401 all species →	Domain	Dynamin, GTPase domain	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR030381 all species →	Domain	Dynamin-type guanine nucleotide-binding (G) domain	Interproscan
IPR003130 all species →	Domain	Dynamin GTPase effector	Interproscan
IPR022812 all species →	Family	Dynamin	Interproscan
IPR036691 all species →	Homologous_superfamily	Endonuclease/exonuclease/phosphatase superfamily	Interproscan
IPR000375 all species →	Domain	Dynamin stalk domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11566 all species →	DYNAMIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003924 all species →	Molecular Function	GTPase activity	Interproscan
GO:0005525 all species →	Molecular Function	GTP binding	Interproscan
GO:0000266 all species →	Biological Process	mitochondrial fission	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan
GO:0005874 all species →	Cellular Component	microtubule	Interproscan
GO:0008017 all species →	Molecular Function	microtubule binding	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K17065	DNM1L; dynamin 1-like protein	EC:3.6.5.5	Exosome	ko04147	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of g9653.t1 across 48 RNA-seq samples of Montipora capitata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

48Samples

47TPM > 0

3Conditions

31.0Max TPM

10.4Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole organisms · ambient pH treatment	21	20	11.86	30.97
whole organisms · low pH treatment	15	15	8.97	21.81
whole organisms · extra low pH treatment pH treatment	12	12	9.56	23.57

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11452232	whole organisms · ambient pH treatment	whole organisms	blastula	ambient pH treatment	SRP254626	30.97
SRR11452230	whole organisms · ambient pH treatment	whole organisms	planulae	ambient pH treatment	SRP254626	26.14
SRR11452234	whole organisms · ambient pH treatment	whole organisms	morula	ambient pH treatment	SRP254626	25.39
SRR11452222	whole organisms · ambient pH treatment	whole organisms	planulae	ambient pH treatment	SRP254626	24.92
SRR11452228	whole organisms · ambient pH treatment	whole organisms	planulae	ambient pH treatment	SRP254626	24.05
SRR11452231	whole organisms · ambient pH treatment	whole organisms	blastula	ambient pH treatment	SRP254626	22.64
SRR11452233	whole organisms · ambient pH treatment	whole organisms	morula	ambient pH treatment	SRP254626	12.94
SRR11452246	whole organisms · ambient pH treatment	whole organisms	prawn chip	ambient pH treatment	SRP254626	10.86
SRR11452250	whole organisms · ambient pH treatment	whole organisms	prawn chip	ambient pH treatment	SRP254626	9.79
SRR11452251	whole organisms · ambient pH treatment	whole organisms	egg	ambient pH treatment	SRP254626	8.95
SRR11452252	whole organisms · ambient pH treatment	whole organisms	prawn chip	ambient pH treatment	SRP254626	8.34
SRR11452242	whole organisms · ambient pH treatment	whole organisms	gastrula	ambient pH treatment	SRP254626	8.06
SRR11452263	whole organisms · ambient pH treatment	whole organisms	egg	ambient pH treatment	SRP254626	7.48
SRR11452237	whole organisms · ambient pH treatment	whole organisms	gastrula	ambient pH treatment	SRP254626	6.44
SRR11452262	whole organisms · ambient pH treatment	whole organisms	egg	ambient pH treatment	SRP254626	5.38
SRR11452217	whole organisms · ambient pH treatment	whole organisms	fertilized embryo	ambient pH treatment	SRP254626	5.07
SRR11452243	whole organisms · ambient pH treatment	whole organisms	gastrula	ambient pH treatment	SRP254626	3.57
SRR11452240	whole organisms · ambient pH treatment	whole organisms	fertilized embryo	ambient pH treatment	SRP254626	3.23
SRR11452259	whole organisms · ambient pH treatment	whole organisms	cleavage	ambient pH treatment	SRP254626	2.63
SRR11452254	whole organisms · ambient pH treatment	whole organisms	cleavage	ambient pH treatment	SRP254626	2.25
SRR11452260	whole organisms · ambient pH treatment	whole organisms	cleavage	ambient pH treatment	SRP254626	0.00
SRR11452221	whole organisms · low pH treatment	whole organisms	planulae	low pH treatment	SRP254626	21.81
SRR11452224	whole organisms · low pH treatment	whole organisms	planulae	low pH treatment	SRP254626	20.82
SRR11452223	whole organisms · low pH treatment	whole organisms	planulae	low pH treatment	SRP254626	20.47
SRR11452249	whole organisms · low pH treatment	whole organisms	prawn chip	low pH treatment	SRP254626	10.06
SRR11452247	whole organisms · low pH treatment	whole organisms	prawn chip	low pH treatment	SRP254626	9.89
SRR11452245	whole organisms · low pH treatment	whole organisms	prawn chip	low pH treatment	SRP254626	8.59
SRR11452229	whole organisms · low pH treatment	whole organisms	fertilized embryo	low pH treatment	SRP254626	8.03
SRR11452236	whole organisms · low pH treatment	whole organisms	gastrula	low pH treatment	SRP254626	7.51
SRR11452241	whole organisms · low pH treatment	whole organisms	gastrula	low pH treatment	SRP254626	5.42
SRR11452238	whole organisms · low pH treatment	whole organisms	gastrula	low pH treatment	SRP254626	4.99
SRR11452258	whole organisms · low pH treatment	whole organisms	cleavage	low pH treatment	SRP254626	4.49
SRR11452218	whole organisms · low pH treatment	whole organisms	fertilized embryo	low pH treatment	SRP254626	4.16
SRR11452216	whole organisms · low pH treatment	whole organisms	fertilized embryo	low pH treatment	SRP254626	3.89
SRR11452255	whole organisms · low pH treatment	whole organisms	cleavage	low pH treatment	SRP254626	3.17
SRR11452253	whole organisms · low pH treatment	whole organisms	cleavage	low pH treatment	SRP254626	1.17
SRR11452227	whole organisms · extra low pH treatment pH treatment	whole organisms	planulae	extra low pH treatment pH treatment	SRP254626	23.57
SRR11452225	whole organisms · extra low pH treatment pH treatment	whole organisms	planulae	extra low pH treatment pH treatment	SRP254626	23.47
SRR11452226	whole organisms · extra low pH treatment pH treatment	whole organisms	planulae	extra low pH treatment pH treatment	SRP254626	20.65
SRR11452248	whole organisms · extra low pH treatment pH treatment	whole organisms	prawn chip	extra low pH treatment pH treatment	SRP254626	9.36
SRR11452244	whole organisms · extra low pH treatment pH treatment	whole organisms	prawn chip	extra low pH treatment pH treatment	SRP254626	7.51
SRR11452239	whole organisms · extra low pH treatment pH treatment	whole organisms	gastrula	extra low pH treatment pH treatment	SRP254626	5.85
SRR11452235	whole organisms · extra low pH treatment pH treatment	whole organisms	gastrula	extra low pH treatment pH treatment	SRP254626	5.32
SRR11452219	whole organisms · extra low pH treatment pH treatment	whole organisms	fertilized embryo	extra low pH treatment pH treatment	SRP254626	4.63
SRR11452220	whole organisms · extra low pH treatment pH treatment	whole organisms	fertilized embryo	extra low pH treatment pH treatment	SRP254626	4.50
SRR11452261	whole organisms · extra low pH treatment pH treatment	whole organisms	fertilized embryo	extra low pH treatment pH treatment	SRP254626	4.40
SRR11452257	whole organisms · extra low pH treatment pH treatment	whole organisms	cleavage	extra low pH treatment pH treatment	SRP254626	3.70
SRR11452256	whole organisms · extra low pH treatment pH treatment	whole organisms	cleavage	extra low pH treatment pH treatment	SRP254626	1.77

Source: CnidoSite RNA-seq expression matrices (MCAPI_TPM, StringTie quantification over 48 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.