Gene detail

Detailed information of g966.t1 in Calvadosia cruxmelitensis

Genomic Location: not available for this species
NR annotation: KAI6657976.1, heterogeneous nuclear ribonucleoprotein A3-like [Oopsacas minuta]
Species Calvadosia cruxmelitensis · all data for this species · gene families

Sequence

Sequence data are not available for Calvadosia cruxmelitensis.
Nucleotide and protein sequences are provided for the species whose genome annotation is complete (see annotated genomes); for this species only the assembly is archived. The functional annotation below is likewise unavailable.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P07909	Heterogeneous nuclear ribonucleoprotein A1 OS=Drosophila melanogaster OX=7227 GN=Hrb98DE PE=2 SV=1
P51991	Heterogeneous nuclear ribonucleoprotein A3 OS=Homo sapiens OX=9606 GN=HNRNPA3 PE=1 SV=2
Q8BG05	Heterogeneous nuclear ribonucleoprotein A3 OS=Mus musculus OX=10090 GN=Hnrnpa3 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000046 (this species only)
Orthogroup (gene family)	OG0000504 (this species only)
Orthogroup (gene family)	OG0000715 (this species only)
Orthogroup (gene family)	OG0001338 (this species only)
Orthogroup (gene family)	OG0001441 (this species only)
Orthogroup (gene family)	OG0001806 (this species only)
Orthogroup (gene family)	OG0001930 (this species only)
Orthogroup (gene family)	OG0002247 (this species only)
Orthogroup (gene family)	OG0014867 (this species only)
Orthogroup (gene family)	OG0032608 (this species only)
Orthogroup (gene family)	OG0171516 (this species only)
Orthogroup (gene family)	OG0171739 (this species only)
Orthogroup (gene family)	OG0172055 (this species only)
Orthogroup (gene family)	OG0173008 (this species only)
Orthogroup (gene family)	OG0174276 (this species only)
Transcription factor family	Homeobox · all TF in this species
Ubiquitin family	UBD\|Other\|Beta-prp · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|CDC20 · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00078 all species →	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan
PF00046 all species →	Homeodomain	Homeodomain	Domain	Interproscan
PF00169 all species →	PH	PH domain	Domain	Interproscan
PF00334 all species →	NDK	Nucleoside diphosphate kinase	Domain	Interproscan
PF05186 all species →	Dpy-30	Dpy-30 motif	Motif	Interproscan
PF12894 all species →	ANAPC4_WD40	Anaphase-promoting complex subunit 4 WD40 domain	Repeat	Interproscan
PF00076 all species →	RRM_1	RNA recognition motif	Domain	Interproscan
PF13843 all species →	DDE_Tnp_1_7	Transposase IS4	Domain	Interproscan
PF01085 all species →	HH_signal	Hedgehog amino-terminal signalling domain	Domain	Interproscan
PF01079 all species →	Hint	Hint module	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR050951 all species →	Family	Retrovirus-related Pol polyprotein	Interproscan
IPR043502 all species →	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR000477 all species →	Domain	Reverse transcriptase domain	Interproscan
IPR043128 all species →	Homologous_superfamily	Reverse transcriptase/Diguanylate cyclase domain	Interproscan
IPR001356 all species →	Domain	Homeobox domain	Interproscan
IPR009057 all species →	Homologous_superfamily	Homeobox-like domain superfamily	Interproscan
IPR001849 all species →	Domain	Pleckstrin homology domain	Interproscan
IPR011993 all species →	Homologous_superfamily	PH-like domain superfamily	Interproscan
IPR034907 all species →	Domain	Nucleoside diphosphate kinase-like domain	Interproscan
IPR036850 all species →	Homologous_superfamily	Nucleoside diphosphate kinase-like domain superfamily	Interproscan
IPR001564 all species →	Family	Nucleoside diphosphate kinase	Interproscan
IPR007858 all species →	Conserved_site	Dpy-30 motif	Interproscan
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR001680 all species →	Repeat	WD40 repeat	Interproscan
IPR036322 all species →	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR050630 all species →	Family	WD repeat Echinoderm Microtubule-associated Protein-like	Interproscan
IPR024977 all species →	Domain	Anaphase-promoting complex subunit 4-like, WD40 domain	Interproscan
IPR012677 all species →	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR000504 all species →	Domain	RNA recognition motif domain	Interproscan
IPR035979 all species →	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR029526 all species →	Domain	PiggyBac transposable element-derived protein	Interproscan
IPR009045 all species →	Homologous_superfamily	Hedgehog signalling/DD-peptidase zinc-binding domain superfamily	Interproscan
IPR000320 all species →	Domain	Hedgehog, N-terminal signalling domain	Interproscan
IPR006141 all species →	PTM	Intein N-terminal splicing region	Interproscan
IPR003586 all species →	Domain	Hint domain C-terminal	Interproscan
IPR001657 all species →	Family	Hedgehog protein	Interproscan
IPR050387 all species →	Family	Hedgehog Signaling	Interproscan
IPR036844 all species →	Homologous_superfamily	Hint domain superfamily	Interproscan
IPR001767 all species →	Domain	Hedgehog protein, Hint domain	Interproscan
IPR003587 all species →	Domain	Hint domain N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR37984 all species →	PROTEIN CBG26694	Interproscan
PTHR46161 all species →	NUCLEOSIDE DIPHOSPHATE KINASE	Interproscan
PTHR13720 all species →	WD-40 REPEAT PROTEIN	Interproscan
PTHR48033 all species →	RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN	Interproscan
PTHR46599 all species →	PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4	Interproscan
PTHR11889 all species →	HEDGEHOG	Interproscan
PTHR19306 all species →	STRUCTURAL MAINTENANCE OF CHROMOSOMES 5,6 SMC5, SMC6	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0004550 all species →	Molecular Function	nucleoside diphosphate kinase activity	Interproscan
GO:0006183 all species →	Biological Process	GTP biosynthetic process	Interproscan
GO:0006228 all species →	Biological Process	UTP biosynthetic process	Interproscan
GO:0006241 all species →	Biological Process	CTP biosynthetic process	Interproscan
GO:0003341 all species →	Biological Process	cilium movement	Interproscan
GO:0005929 all species →	Cellular Component	cilium	Interproscan
GO:1902176 all species →	Biological Process	negative regulation of oxidative stress-induced intrinsic apoptotic signaling pathway	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0000226 all species →	Biological Process	microtubule cytoskeleton organization	Interproscan
GO:0008017 all species →	Molecular Function	microtubule binding	Interproscan
GO:0072686 all species →	Cellular Component	mitotic spindle	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0000790 all species →	Cellular Component	chromatin	Interproscan
GO:0005654 all species →	Cellular Component	nucleoplasm	Interproscan
GO:0010468 all species →	Biological Process	regulation of gene expression	Interproscan
GO:0007267 all species →	Biological Process	cell-cell signaling	Interproscan
GO:0016539 all species →	Biological Process	intein-mediated protein splicing	Interproscan
GO:0007275 all species →	Biological Process	multicellular organism development	Interproscan
GO:0001708 all species →	Biological Process	cell fate specification	Interproscan
GO:0005113 all species →	Molecular Function	patched binding	Interproscan
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan
GO:0005615 all species →	Cellular Component	extracellular space	Interproscan
GO:0007224 all species →	Biological Process	smoothened signaling pathway	Interproscan
GO:0016540 all species →	Biological Process	protein autoprocessing	Interproscan
GO:0000724 all species →	Biological Process	double-strand break repair via homologous recombination	Interproscan
GO:0003684 all species →	Molecular Function	damaged DNA binding	Interproscan
GO:0003697 all species →	Molecular Function	single-stranded DNA binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0030915 all species →	Cellular Component	Smc5-Smc6 complex	Interproscan
GO:0035861 all species →	Cellular Component	site of double-strand break	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K20790	NME5; nucleoside diphosphate kinase homolog 5	-	Cilium and associated proteins	ko03037	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.