Gene detail

Detailed information of g9673.t1.1 in Dendrophyllia cribrosa

Genomic Location: :...
NR annotation: CAH3146106.1, unnamed protein product, partial [Porites evermanni]

Gene Structure

More details in Jbrowse

Sequence

CDS

g9673.t1

ATGAGAAAAGTGAAATGCGTGTTAGTGGGAGACGAAAACGTCGACAAACGAGAACTGTTTATCAAATATGTGGCCTTGATGAATGCTGAAGCCGAAAAAGCGACAGAAGAAATCGCAACAGGCGCCGACACAGATCCGCTGCACCCCGAAAATAACGAGGTTTTTCAAAATGGGAGTGTTATTCGTGACCAAAACAAAGAGGAAATTACAgaaaaacttgaaaacgttcaAACGCATCCAAATTTCAGAGTTATTCATAGCGACCCTGATAAAGGAAGTGCATCCAGCATAGATTCGCAGCAGGACTCTATCGACCAGTGGACAGGCACGGTAACCGTAGCAGGAAAGCATTTCTTCTTGGAAGTGCTCGACGCACGATGTCACGAAGCTTACGACAACATCAGGTCGGACGCTTACACGGACACGGACGTTTTTCTGGTTTGTTTCTCGGTGGTTCGCGCGGCGTCTTGGGAAAACGCCCAAAATAAGTGGATACCGGAAATCCAAGAGTATTGTCCTATCACTCCGTTCATTTTAGTGGGAACACACATCGAATGGCGCGAGCTGTGGGACGAGAAAGATCCTTCGAGAAAACCGGTTTATTCTGTTGCGGGAACCGGTTATGCCCAGCAAGTTGGCGCGGTAAAGTATTTGGAGTGTTCAACTTGCGACAATGAGGTGCGACAGATTTTTGACGCAGCTATTCTTGCGAGTGTTATGGACCGTATGGAACTCTCCATGTTCAATCCGGATTTTGAGAAAGAGGGAACAACTTTGCTTCACCGCGCAGCCAGACGTAATCACATCCCTTCGCTAGAAGCTCTCGTAGATTCCATTGACGTGACAGCTAAAGATAAAGAGTTGCACACTGCATTGGATATCGCGCTGAAAGAGAACAACTTGAATGCGGTGCGGTTTCTCCTGGAGAGCGGATGTGAAATGCCTATCCCGCCCGATCCTTGGAAGAAAGTTTGTGAGTTCTGGGTCAGTGACAGCGAGGATTCGGATCGTGTTGTAAACAGTGACATCACTGAGTTCACCCGACAGTTGACGTTCTTTTTCACTTCCGCATCGCCGCGCCCGCTCGCTAGAATCCTTCTGGTTGGTCAGAACGGAACGGAAGTTGCGAAGTTTGTGAACGAGACAGTCCCAATGTTGCCAGTGTTATCGCTGACCATAGTGAACGCGGACGGGCCAGTCCTGTTCGACTTCTCGCGTGTTCAGTCCTGTTTTGAGGCGCTAACGATCACGAACTGCGATTTCGGTAGTGGGGAGTTGCCGGGAACTCTCTATTCAATAACGGGTCTGCAGAGTTTGTGCGTCGTTAAGTCAGGCGTGTCGCGTTTGACCGAGCAACTAGGCGAATTGAAAAGCTTACAGCGTTTGCGCTTAAGTGGAAACAAAATACGGAAACTTCCCGACACCATTTCCAGGTTGCAGAAATTAAAGTTCGCGCACTGTGATCGGAATGCTCTGGACAATCTGCCCGATACCCTCGGTTGTTTAGGCTCGCTTGAGACCCTGGATTTGAGCCATAACAGATTGGAGAAACTGTCTGCCTCGCTTGGTCTGTTGACCAAGCTGCAAAATCTTTGGTTCGCGAGGAATCGGCTGAAGTTTCCTCCCGCTCACATTCTCAACAAAGGAACTGAGAGCATTCTGGAGTTTCTTGGCGATTTTTTGGATGATCCTGTGTCGAACAGTCAGATCAAAATGACGGTCGTAGGAGGAAGCAACGTGGGTAAAACCGCTATTGTGAAGGCTCTTCAACATTCAAGGGACTGGCGAATTAACGGTGTTGGAGAACTTGACAAGACTGAAGGGCTGGAAATATCTTCCATGGATCTGATgcttttgaaactgaaagtGTTTGATTTAGCTGGAGATGAATCCTTTTTCAGCTCCCATCAATTTTTCCTTTCGGAGAACACTCTCTACCAAGTTGTCTTCGACATGAGCGCTTACACGGTCAGCAAGACGTCGTTGTCGATATGTCAACTCGGTAGATTAGAACTTTGGCTTCAAGTCATCTTCTCGAGAGCTCCGAACTCTCACGTTCTTCTCGTCGGCACTCACGCCGACGACCCGAAGCTCAACGATGAAATCCGAGGGCGCATTCGTGGAGACATCGAGATGCTCCTTAGCAAGTATCGTCGGGAGCATAGACGTCACTTCGAAGGGGAAGCAGTGCCTCAATGTGGTCTGTGCGATGGGACCCTGATCTGTGAGGGCTCAGGCGGCTCGATGTTTTATGTCCAGGAACAAGTAACCCCTCATGGCTCTACAATCGTCCCAGAGCCCTGCATTCCACACGTGATAGGCTACTATGAGGTGAGCTGTCAGGCCCAGTTTCCCAAAAATTTTCTCAGTTCCAAGAACGGCAGCTTGCAGAAGCTCAAGGTGGGAGTGGGTTCTAGTGCCCATGTCCTCCTCAACACCAAGGTCAGTTCCCGAATCCCGCAAAAATGTCTGTACGTGCGGGATCGTATCCACGAGATGTGCAACGCAGAGAGTGAGTTGAAGAAGTGGCCGCTGCTCACATATGACCGCCTGCGCGAGATCGCTTATGGTTGTGGAGTCAAGCAGGACTTCAAGCTCAAGGCTCTCATGACCTACTTTCATTCCCAAGGAGAAATTCTCTGGTACGAAGATATGCCGGACGTCGGTGACGTCATCTTCATCGACCCTTCGTGGCTGTCCAAACAGGTATGCCTCCTCATCGGTTCGAACTCGGGCGCGAGTTCAGGATTGGACGGAATATTACGGATCGATAACCTGGCCAAGACTTGGCCGGAGGTGCCCGAAGGACAGCGCTTTTCCATGCTAACGTTGTTCAGGAATCTAGGACTATGCGTCCCCCTCTCGGAGACCGAAGACCTTGTTCCTTTTCAGTTGCCTATCGGTCACCCGGACAAGGACTTGTGGCCTCCACAACCAACGGACGACGATCGACAGATAAGCTCCGagtttcatttcagttttcttCCTCCGACTTTCTTCAGCGATCTTACAGTTGCCATCAACAGACGACACCTGCCGAATAGCTTCGCGGTAGAGCCGACCTTTTATCGCTTTTATATGGTGTTCGCTACTACATCCATGGCCAGCATGGGCTGTTCGCTGCACTGTAAAGAGATTGCGGCTCATCCTTTAGCAGAGAACGTGGAAGTACACCGGGTCAGCATCGAAGCTATCCCATATGAGAACAAGCTAAAGGTGATCATACGCGGCCCCACCCCCTGCTGTGTTCTCCCAGACATAAGAGCTGCAATCAAGATGGTGGTGGACACACGCTATCCCGGAATACGCTATATCAGGCGGATAGTCTGCCCCGCATGCGATTTCACTGGGTTTAAGAACCCTTCTCTCCTCAACAACTTCATTAACGAAGGAGAAAACTTTTGCTCATGGGGTCATCCCTTGGGTTCAGAGGCCGCGATCATAGCTGGTGATTTGCCTGCCGTCCGACATGCCCCAGAGTTGCCGCCAAAAGCAAAAGGAGAAGTTAGACTGGGGTGTTTTTCGATGAGGCTAGAGGACTCCTCGAAGACTGTTACTGCCCAAGACTCCTTGCTGTGTTTCCAATTGGTTTTCAAAGCGCACCGTTCAAAAACCGCCTTCGCGTGA

Transcript

g9673.t1

Protein

Uniprot

Uniprot term	Description
Q05062	Cell division control protein 42 homolog OS=Caenorhabditis elegans OX=6239 GN=cdc-42 PE=1 SV=2
Q2KJ93	Cell division control protein 42 homolog OS=Bos taurus OX=9913 GN=CDC42 PE=1 SV=1
P60952	Cell division control protein 42 homolog OS=Canis lupus familiaris OX=9615 GN=CDC42 PE=2 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF16095	COR	C-terminal of Roc, COR, domain	Family	Interproscan
PF12796	Ank_2	Ankyrin repeats (3 copies)	Repeat	Interproscan
PF08477	Roc	Ras of Complex, Roc, domain of DAPkinase	Domain	Interproscan
PF00560	LRR_1	Leucine Rich Repeat	Repeat	Interproscan
PF00071	Ras	Ras family	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR036770	Homologous_superfamily	Ankyrin repeat-containing domain superfamily	Interproscan
IPR032171	Domain	C-terminal of Roc (COR) domain	Interproscan
IPR020859	Domain	Roc domain	Interproscan
IPR001611	Repeat	Leucine-rich repeat	Interproscan
IPR001806	Family	Small GTPase	Interproscan
IPR002110	Repeat	Ankyrin repeat	Interproscan
IPR032675	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan
IPR036388	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan
IPR003591	Repeat	Leucine-rich repeat, typical subtype	Interproscan
IPR003578	Family	Small GTPase Rho	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24072	RHO FAMILY GTPASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0003924	Molecular Function	GTPase activity	Interproscan
GO:0005525	Molecular Function	GTP binding	Interproscan
GO:0006897	Biological Process	endocytosis	Interproscan
GO:0007163	Biological Process	establishment or maintenance of cell polarity	Interproscan
GO:0007264	Biological Process	small GTPase-mediated signal transduction	Interproscan
GO:0019901	Molecular Function	protein kinase binding	Interproscan
GO:0032488	Biological Process	Cdc42 protein signal transduction	Interproscan