Genomic Location: not available for this species
NR annotation: XP_047132802.1, uncharacterized protein LOC105848108 [Hydra vulgaris]
Species Calvadosia cruxmelitensis · all data for this species · gene families
| UniProt accession | Description |
|---|---|
| Q4ADV7 | Guanine nucleotide exchange factor subunit RIC1 OS=Homo sapiens OX=9606 GN=RIC1 PE=1 SV=2 |
| Q69ZJ7 | Guanine nucleotide exchange factor subunit RIC1 OS=Mus musculus OX=10090 GN=Ric1 PE=1 SV=2 |
| A0A2R8QPS5 | Guanine nucleotide exchange factor subunit RIC1 OS=Danio rerio OX=7955 GN=ric1 PE=3 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0000000 (this species only) · gene tree & orthology |
| Orthogroup (gene family) | OG0000252 (this species only) · gene tree & orthology |
| Orthogroup (gene family) | OG0001156 (this species only) · gene tree & orthology |
| Orthogroup (gene family) | OG0003201 (this species only) · gene tree & orthology |
| Orthogroup (gene family) | OG0007640 (this species only) · gene tree & orthology |
| Orthogroup (gene family) | OG0009696 (this species only) · gene tree & orthology |
| Orthogroup (gene family) | OG0012658 (this species only) · gene tree & orthology |
| Orthogroup (gene family) | OG0028135 (this species only) · gene tree & orthology |
| Orthogroup (gene family) | OG0061735 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF07064 all species → | RIC1 | RIC1 | Family | Interproscan |
| PF00261 all species → | Tropomyosin | Tropomyosin | Coiled-coil | Interproscan |
| PF20920 all species → | DAXX_hist_bd | Death domain-associated protein 6, histone binding domain | Domain | Interproscan |
| PF04430 all species → | DUF498 | Protein of unknown function (DUF498/DUF598) | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR009771 all species → | Domain | Ribosome control protein 1 | Interproscan |
| IPR040096 all species → | Family | RAB6A-GEF complex partner protein 1 | Interproscan |
| IPR000533 all species → | Family | Tropomyosin | Interproscan |
| IPR046426 all species → | Homologous_superfamily | Daxx, histone-binding domain superfamily | Interproscan |
| IPR046378 all species → | Domain | Daxx, histone-binding domain | Interproscan |
| IPR007523 all species → | Family | NDUFAF3/Mth938 domain-containing protein | Interproscan |
| IPR036748 all species → | Homologous_superfamily | MTH938-like superfamily | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR22746 all species → | RAB6A-GEF COMPLEX PARTNER PROTEIN 1 | Interproscan |
| PTHR22955 all species → | RETROTRANSPOSON | Interproscan |
| PTHR19269 all species → | TROPOMYOSIN | Interproscan |
| PTHR21192 all species → | NUCLEAR PROTEIN E3-3 | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0000139 all species → | Cellular Component | Golgi membrane | Interproscan |
| GO:0005829 all species → | Cellular Component | cytosol | Interproscan |
| GO:0006886 all species → | Biological Process | intracellular protein transport | Interproscan |
| GO:0034066 all species → | Cellular Component | Ric1-Rgp1 guanyl-nucleotide exchange factor complex | Interproscan |
| GO:0042147 all species → | Biological Process | retrograde transport, endosome to Golgi | Interproscan |
| GO:0005884 all species → | Cellular Component | actin filament | Interproscan |
| GO:0006936 all species → | Biological Process | muscle contraction | Interproscan |
| GO:0007015 all species → | Biological Process | actin filament organization | Interproscan |
| GO:0051015 all species → | Molecular Function | actin filament binding | Interproscan |
| GO:0042393 all species → | Molecular Function | histone binding | Interproscan |
| GO:0005743 all species → | Cellular Component | mitochondrial inner membrane | Interproscan |
| GO:0032981 all species → | Biological Process | mitochondrial respiratory chain complex I assembly | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K09008 | NDUFAF3; NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3 | - | Mitochondrial biogenesis | ko03029 | deepkoala |
Genes whose expression across the transcriptome samples of Calvadosia cruxmelitensis tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Calvadosia cruxmelitensis, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | sequence table not available | – |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | sequence table not available | – |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
