Detailed information of g971.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: CAB4038090.1, Retrovirus-related Pol poly from transposon TNT 1-94, partial [Paramuricea clavata]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot Gene family
Uniprot termDescription
P10978Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1
Q1JQB2Mitotic checkpoint protein BUB3 OS=Bos taurus OX=9913 GN=BUB3 PE=2 SV=1
Q9WVA3Mitotic checkpoint protein BUB3 OS=Mus musculus OX=10090 GN=Bub3 PE=1 SV=2
Gene familySubfamily
Ubiquitin FamilyUBD|Other|Beta-prp

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00017SH2SH2 domainDomainInterproscan
PF07690MFS_1Major Facilitator SuperfamilyFamilyInterproscan
PF01423LSMLSM domain DomainInterproscan
PF02010REJREJ domainFamilyInterproscan
PF00125HistoneCore histone H2A/H2B/H3/H4DomainInterproscan
PF01545Cation_effluxCation efflux familyFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR015943Homologous_superfamilyWD40/YVTN repeat-like-containing domain superfamilyInterproscan
IPR036322Homologous_superfamilyWD40-repeat-containing domain superfamilyInterproscan
IPR000980DomainSH2 domainInterproscan
IPR036860Homologous_superfamilySH2 domain superfamilyInterproscan
IPR036259Homologous_superfamilyMFS transporter superfamilyInterproscan
IPR011701FamilyMajor facilitator superfamilyInterproscan
IPR049680FamilySolute carrier family 49-likeInterproscan
IPR010920Homologous_superfamilyLSM domain superfamilyInterproscan
IPR034099FamilySmall nuclear ribonucleoprotein Sm D3Interproscan
IPR027141FamilyLike-Sm (LSM) domain containing protein, LSm4/SmD1/SmD3Interproscan
IPR001163DomainSm domain, eukaryotic/archaea-typeInterproscan
IPR002859DomainPKD/REJ-like domainInterproscan
IPR014010DomainREJ domainInterproscan
IPR000164FamilyHistone H3/CENP-AInterproscan
IPR007125DomainHistone H2A/H2B/H3Interproscan
IPR009072Homologous_superfamilyHistone-foldInterproscan
IPR050291FamilyCation Diffusion Facilitator TransporterInterproscan
IPR027469Homologous_superfamilyCation efflux transmembrane domain superfamilyInterproscan
IPR002524FamilyCation efflux proteinInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR10971MRNA EXPORT FACTOR AND BUB3Interproscan
PTHR10155PHOSPHATIDYLINOSITOL 3-KINASE REGULATORY SUBUNITInterproscan
PTHR10924MAJOR FACILITATOR SUPERFAMILY PROTEIN-RELATEDInterproscan
PTHR23338SMALL NUCLEAR RIBONUCLEOPROTEIN SMInterproscan
PTHR45823T-SNARE COILED-COIL HOMOLOGY DOMAIN-CONTAINING PROTEINInterproscan
PTHR46730POLYCYSTIN-1Interproscan
PTHR11426HISTONE H3Interproscan
PTHR43840MITOCHONDRIAL METAL TRANSPORTER 1-RELATEDInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0000776Cellular ComponentkinetochoreInterproscan
GO:0005654Cellular ComponentnucleoplasmInterproscan
GO:0007094Biological Processmitotic spindle assembly checkpoint signalingInterproscan
GO:0033597Cellular Componentmitotic checkpoint complexInterproscan
GO:0043130Molecular Functionubiquitin bindingInterproscan
GO:1990298Cellular Componentbub1-bub3 complexInterproscan
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0005942Cellular Componentphosphatidylinositol 3-kinase complexInterproscan
GO:0046854Biological Processphosphatidylinositol phosphate biosynthetic processInterproscan
GO:0046935Molecular Function1-phosphatidylinositol-3-kinase regulator activityInterproscan
GO:0022857Molecular Functiontransmembrane transporter activityInterproscan
GO:0055085Biological Processtransmembrane transportInterproscan
GO:0016020Cellular ComponentmembraneInterproscan
GO:0043231Cellular Componentintracellular membrane-bounded organelleInterproscan
GO:0051184Molecular Functionobsolete cofactor transmembrane transporter activityInterproscan
GO:0000387Biological Processspliceosomal snRNP assemblyInterproscan
GO:0005681Cellular Componentspliceosomal complexInterproscan
GO:0000243Cellular Componentcommitment complexInterproscan
GO:0003723Molecular FunctionRNA bindingInterproscan
GO:0005682Cellular ComponentU5 snRNPInterproscan
GO:0005685Cellular ComponentU1 snRNPInterproscan
GO:0005686Cellular ComponentU2 snRNPInterproscan
GO:0005687Cellular ComponentU4 snRNPInterproscan
GO:0005689Cellular ComponentU12-type spliceosomal complexInterproscan
GO:0006396Biological ProcessRNA processingInterproscan
GO:0034715Cellular ComponentpICln-Sm protein complexInterproscan
GO:0034719Cellular ComponentSMN-Sm protein complexInterproscan
GO:0071011Cellular Componentprecatalytic spliceosomeInterproscan
GO:0071013Cellular Componentcatalytic step 2 spliceosomeInterproscan
GO:0097526Cellular Componentspliceosomal tri-snRNP complexInterproscan
GO:0005261Molecular Functionmonoatomic cation channel activityInterproscan
GO:0005886Cellular Componentplasma membraneInterproscan
GO:0006816Biological Processcalcium ion transportInterproscan
GO:0000786Cellular ComponentnucleosomeInterproscan
GO:0003677Molecular FunctionDNA bindingInterproscan
GO:0030527Molecular Functionstructural constituent of chromatinInterproscan
GO:0046982Molecular Functionprotein heterodimerization activityInterproscan
GO:0008324Molecular Functionmonoatomic cation transmembrane transporter activityInterproscan
GO:0006812Biological Processmonoatomic cation transportInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K11253H3; histone H3-DNA replication proteinsko03032deepkoala
Transportersko02000deepkoala
Exosomeko04147deepkoala

TOP