Gene detail

Detailed information of g972.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: CAB3977908.1, Retrovirus-related Pol poly from transposon TNT 1-94 [Paramuricea clavata]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

Protein

Uniprot

Uniprot term	Description
P10978	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1
P0C2J5	Transposon Ty2-LR2 Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY2B-LR2 PE=5 SV=1
Q12491	Transposon Ty2-B Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY2B-B PE=3 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02301	HORMA	HORMA domain	Domain	Interproscan
PF13848	Thioredoxin_6	Thioredoxin-like domain	Domain	Interproscan
PF00085	Thioredoxin	Thioredoxin	Domain	Interproscan
PF05544	Pro_racemase	Proline racemase	Family	Interproscan
PF08243	SPT2	SPT2 chromatin protein	Domain	Interproscan
PF00995	Sec1	Sec1 family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR045091	Family	Mad2-like	Interproscan
IPR036570	Homologous_superfamily	HORMA domain superfamily	Interproscan
IPR003511	Domain	HORMA domain	Interproscan
IPR036691	Homologous_superfamily	Endonuclease/exonuclease/phosphatase superfamily	Interproscan
IPR036397	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR012337	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR005788	Domain	Protein disulfide-isomerase, thioredoxin-like domain	Interproscan
IPR013766	Domain	Thioredoxin domain	Interproscan
IPR036249	Homologous_superfamily	Thioredoxin-like superfamily	Interproscan
IPR017937	Conserved_site	Thioredoxin, conserved site	Interproscan
IPR003107	Repeat	HAT (Half-A-TPR) repeat	Interproscan
IPR011990	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR045243	Family	mRNA 3'-end-processing protein Rna14-like	Interproscan
IPR008794	Family	Proline racemase family	Interproscan
IPR013256	Family	Chromatin SPT2	Interproscan
IPR027482	Homologous_superfamily	Sec1-like, domain 2	Interproscan
IPR001619	Family	Sec1-like protein	Interproscan
IPR036045	Homologous_superfamily	Sec1-like superfamily	Interproscan
IPR043127	Homologous_superfamily	Sec1-like, domain 3a	Interproscan
IPR001584	Domain	Integrase, catalytic core	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11842	MITOTIC SPINDLE ASSEMBLY CHECKPOINT PROTEIN MAD2	Interproscan
PTHR33395	TRANSCRIPTASE, PUTATIVE-RELATED-RELATED	Interproscan
PTHR18929	PROTEIN DISULFIDE ISOMERASE	Interproscan
PTHR19980	RNA CLEAVAGE STIMULATION FACTOR	Interproscan
PTHR33442	TRANS-3-HYDROXY-L-PROLINE DEHYDRATASE	Interproscan
PTHR34204	RNA-BINDING ASCH DOMAIN PROTEIN	Interproscan
PTHR22691	YEAST SPT2-RELATED	Interproscan
PTHR11679	VESICLE PROTEIN SORTING-ASSOCIATED	Interproscan
PTHR42648	TRANSPOSASE, PUTATIVE-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000776	Cellular Component	kinetochore	Interproscan
GO:0005654	Cellular Component	nucleoplasm	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0007094	Biological Process	mitotic spindle assembly checkpoint signaling	Interproscan
GO:0007508	Biological Process	larval heart development	Interproscan
GO:0031012	Cellular Component	extracellular matrix	Interproscan
GO:0061343	Biological Process	cell adhesion involved in heart morphogenesis	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003756	Molecular Function	protein disulfide isomerase activity	Interproscan
GO:0005783	Cellular Component	endoplasmic reticulum	Interproscan
GO:0006457	Biological Process	protein folding	Interproscan
GO:0034976	Biological Process	response to endoplasmic reticulum stress	Interproscan
GO:0006396	Biological Process	RNA processing	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0003729	Molecular Function	mRNA binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0031123	Biological Process	RNA 3'-end processing	Interproscan
GO:0031124	Biological Process	mRNA 3'-end processing	Interproscan
GO:0016836	Molecular Function	hydro-lyase activity	Interproscan
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0005730	Cellular Component	nucleolus	Interproscan
GO:0006334	Biological Process	nucleosome assembly	Interproscan
GO:0006360	Biological Process	transcription by RNA polymerase I	Interproscan
GO:0042393	Molecular Function	histone binding	Interproscan
GO:0016192	Biological Process	vesicle-mediated transport	Interproscan
GO:0000139	Cellular Component	Golgi membrane	Interproscan
GO:0006886	Biological Process	intracellular protein transport	Interproscan
GO:0015074	Biological Process	DNA integration	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K02537	MAD2; mitotic spindle assembly checkpoint protein MAD2	-	Arginine and proline metabolism	ko00330	deepkoala
			Exosome	ko04147	deepkoala
			Transcription machinery	ko03021	deepkoala
			Chromosome and associated proteins	ko03036	deepkoala