Gene detail

Detailed information of g9727.t1 in Acropora digitifera

Genomic Location: chr4Alt:28638011...28639007
NR annotation: XP_015778327.1, PREDICTED: glucose-induced degradation protein 8 homolog [Acropora digitifera]
Species Acropora digitifera · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A7SWD3	Glucose-induced degradation protein 8 homolog OS=Nematostella vectensis OX=45351 GN=v1g247787 PE=3 SV=1
E7FGY2	Glucose-induced degradation protein 8-B homolog OS=Danio rerio OX=7955 GN=gid8b PE=2 SV=2
Q6PC55	Glucose-induced degradation protein 8-A homolog OS=Danio rerio OX=7955 GN=gid8a PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF10607 all species →	CTLH	CTLH/CRA C-terminal to LisH motif domain	Domain	Interproscan
PF08513 all species →	LisH	LisH	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013144 all species →	Domain	CRA domain	Interproscan
IPR024964 all species →	Domain	CTLH/CRA C-terminal to LisH motif domain	Interproscan
IPR006594 all species →	Conserved_site	LIS1 homology motif	Interproscan
IPR006595 all species →	Domain	CTLH, C-terminal LisH motif	Interproscan
IPR050618 all species →	Family	Ubiquitination and Signaling Pathway Regulator	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12864 all species →	RAN BINDING PROTEIN 9-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0043161 all species →	Biological Process	proteasome-mediated ubiquitin-dependent protein catabolic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K23338	GID8; glucose-induced degradation protein 8	-	Ubiquitin system	ko04121	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of g9727.t1 across 39 RNA-seq samples of Acropora digitifera. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

39Samples

39TPM > 0

1Conditions

78.6Max TPM

58.5Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
Coral branch	39	39	58.46	78.59

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR23047243	Coral branch	Coral branch	adult	not recorded	SRP416931	78.59
SRR23047220	Coral branch	Coral branch	adult	not recorded	SRP416931	76.89
SRR23047207	Coral branch	Coral branch	adult	not recorded	SRP416931	75.93
SRR23047208	Coral branch	Coral branch	adult	not recorded	SRP416931	73.15
SRR23047244	Coral branch	Coral branch	adult	not recorded	SRP416931	70.87
SRR23047221	Coral branch	Coral branch	adult	not recorded	SRP416931	70.32
SRR23047237	Coral branch	Coral branch	adult	not recorded	SRP416931	69.97
SRR23047219	Coral branch	Coral branch	adult	not recorded	SRP416931	69.53
SRR23047210	Coral branch	Coral branch	adult	not recorded	SRP416931	68.03
SRR23047232	Coral branch	Coral branch	adult	not recorded	SRP416931	67.88
SRR23047236	Coral branch	Coral branch	adult	not recorded	SRP416931	67.56
SRR23047240	Coral branch	Coral branch	adult	not recorded	SRP416931	66.86
SRR23047209	Coral branch	Coral branch	adult	not recorded	SRP416931	65.41
SRR23047235	Coral branch	Coral branch	adult	not recorded	SRP416931	64.30
SRR23047239	Coral branch	Coral branch	adult	not recorded	SRP416931	64.13
SRR23047222	Coral branch	Coral branch	adult	not recorded	SRP416931	61.37
SRR23047218	Coral branch	Coral branch	adult	not recorded	SRP416931	59.91
SRR23047224	Coral branch	Coral branch	adult	not recorded	SRP416931	59.68
SRR23047216	Coral branch	Coral branch	adult	not recorded	SRP416931	59.49
SRR23047215	Coral branch	Coral branch	adult	not recorded	SRP416931	57.11
SRR23047225	Coral branch	Coral branch	adult	not recorded	SRP416931	56.87
SRR23047217	Coral branch	Coral branch	adult	not recorded	SRP416931	56.52
SRR23047212	Coral branch	Coral branch	adult	not recorded	SRP416931	56.09
SRR23047211	Coral branch	Coral branch	adult	not recorded	SRP416931	54.94
SRR23047242	Coral branch	Coral branch	adult	not recorded	SRP416931	54.31
SRR23047227	Coral branch	Coral branch	adult	not recorded	SRP416931	53.45
SRR23047241	Coral branch	Coral branch	adult	not recorded	SRP416931	52.16
SRR23047223	Coral branch	Coral branch	adult	not recorded	SRP416931	51.88
SRR23047233	Coral branch	Coral branch	adult	not recorded	SRP416931	51.72
SRR23047231	Coral branch	Coral branch	adult	not recorded	SRP416931	51.52
SRR23047213	Coral branch	Coral branch	adult	not recorded	SRP416931	51.37
SRR23047238	Coral branch	Coral branch	adult	not recorded	SRP416931	50.28
SRR23047226	Coral branch	Coral branch	adult	not recorded	SRP416931	46.03
SRR23047228	Coral branch	Coral branch	adult	not recorded	SRP416931	44.75
SRR23047230	Coral branch	Coral branch	adult	not recorded	SRP416931	43.22
SRR23047229	Coral branch	Coral branch	adult	not recorded	SRP416931	43.07
SRR23047214	Coral branch	Coral branch	adult	not recorded	SRP416931	39.56
SRR23047234	Coral branch	Coral branch	adult	not recorded	SRP416931	38.96
SRR23047206	Coral branch	Coral branch	adult	not recorded	SRP416931	36.15

Source: CnidoSite RNA-seq expression matrices (ADIGI_TPM, StringTie quantification over 39 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.