Detailed information of g973.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: KAJ8030725.1, hypothetical protein HOLleu_27212 [Holothuria leucospilota]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
P10978Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1
Q6V0I7Protocadherin Fat 4 OS=Homo sapiens OX=9606 GN=FAT4 PE=1 SV=2
Q91ZI0Cadherin EGF LAG seven-pass G-type receptor 3 OS=Mus musculus OX=10090 GN=Celsr3 PE=2 SV=2

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00078RVT_1Reverse transcriptase (RNA-dependent DNA polymerase)DomainInterproscan
PF17919RT_RNaseH_2RNase H-like domain found in reverse transcriptaseDomainInterproscan
PF00013KH_1KH domainDomainInterproscan
PF01084Ribosomal_S18Ribosomal protein S18FamilyInterproscan
PF00028CadherinCadherin domainDomainInterproscan
PF00209SNFSodium:neurotransmitter symporter familyFamilyInterproscan
PF00276Ribosomal_L23Ribosomal protein L23FamilyInterproscan
PF00858ASCAmiloride-sensitive sodium channelFamilyInterproscan
PF00098zf-CCHCZinc knuckleDomainInterproscan
PF14223Retrotran_gag_2gag-polypeptide of LTR copia-typeFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR000477DomainReverse transcriptase domainInterproscan
IPR050951FamilyRetrovirus-related Pol polyproteinInterproscan
IPR043128Homologous_superfamilyReverse transcriptase/Diguanylate cyclase domainInterproscan
IPR043502Homologous_superfamilyDNA/RNA polymerase superfamilyInterproscan
IPR021109Homologous_superfamilyAspartic peptidase domain superfamilyInterproscan
IPR041577DomainReverse transcriptase/retrotransposon-derived protein, RNase H-like domainInterproscan
IPR036870Homologous_superfamilySmall ribosomal subunit protein bS18 superfamilyInterproscan
IPR015919Homologous_superfamilyCadherin-like superfamilyInterproscan
IPR004088DomainK Homology domain, type 1Interproscan
IPR036612Homologous_superfamilyK Homology domain, type 1 superfamilyInterproscan
IPR002126DomainCadherin-likeInterproscan
IPR001648FamilySmall ribosomal subunit protein bS18Interproscan
IPR020894Conserved_siteCadherin conserved siteInterproscan
IPR004087DomainK Homology domainInterproscan
IPR039808FamilyCadherinInterproscan
IPR000175FamilySodium:neurotransmitter symporterInterproscan
IPR037272Homologous_superfamilySodium:neurotransmitter symporter superfamilyInterproscan
IPR012677Homologous_superfamilyNucleotide-binding alpha-beta plait domain superfamilyInterproscan
IPR012678Homologous_superfamilyRibosomal protein uL23/eL15/eS24 core domain superfamilyInterproscan
IPR013025FamilyLarge ribosomal subunit protein uL23-likeInterproscan
IPR001873FamilyEpithelial sodium channelInterproscan
IPR001878DomainZinc finger, CCHC-typeInterproscan
IPR036875Homologous_superfamilyZinc finger, CCHC-type superfamilyInterproscan
IPR036397Homologous_superfamilyRibonuclease H superfamilyInterproscan
IPR001584DomainIntegrase, catalytic coreInterproscan
IPR012337Homologous_superfamilyRibonuclease H-like superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR37984PROTEIN CBG26694Interproscan
PTHR24027CADHERIN-23Interproscan
PTHR11616SODIUM/CHLORIDE DEPENDENT TRANSPORTERInterproscan
PTHR12059RIBOSOMAL PROTEIN L23-RELATEDInterproscan
PTHR19446REVERSE TRANSCRIPTASESInterproscan
PTHR47481-Interproscan
PTHR46113SNAC DOMAIN-CONTAINING PROTEINInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0005509Molecular Functioncalcium ion bindingInterproscan
GO:0016020Cellular ComponentmembraneInterproscan
GO:0003723Molecular FunctionRNA bindingInterproscan
GO:0007156Biological Processhomophilic cell adhesion via plasma membrane adhesion moleculesInterproscan
GO:0003735Molecular Functionstructural constituent of ribosomeInterproscan
GO:0005840Cellular ComponentribosomeInterproscan
GO:0006412Biological ProcesstranslationInterproscan
GO:0005886Cellular Componentplasma membraneInterproscan
GO:0007155Biological Processcell adhesionInterproscan
GO:0003676Molecular Functionnucleic acid bindingInterproscan
GO:0016342Cellular Componentcatenin complexInterproscan
GO:0045296Molecular Functioncadherin bindingInterproscan
GO:0098609Biological Processcell-cell adhesionInterproscan
GO:0098742Biological Processcell-cell adhesion via plasma-membrane adhesion moleculesInterproscan
GO:0005887Cellular Componentplasma membraneInterproscan
GO:0035725Biological Processsodium ion transmembrane transportInterproscan
GO:0005762Cellular Componentmitochondrial large ribosomal subunitInterproscan
GO:0032543Biological Processmitochondrial translationInterproscan
GO:0005272Molecular Functionsodium channel activityInterproscan
GO:0006814Biological Processsodium ion transportInterproscan
GO:0008270Molecular Functionzinc ion bindingInterproscan
GO:0015074Biological ProcessDNA integrationInterproscan

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