Detailed information of g974.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: XP_032232203.2, degenerin mec-4 [Nematostella vectensis]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q9NY37Bile acid-sensitive ion channel OS=Homo sapiens OX=9606 GN=ASIC5 PE=1 SV=1
O01635Degenerin-like protein asic-1 OS=Caenorhabditis elegans OX=6239 GN=asic-1 PE=3 SV=2
Q9WU38Epithelial sodium channel subunit beta OS=Mus musculus OX=10090 GN=Scnn1b PE=1 SV=1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00860Xan_ur_permeasePermease familyFamilyInterproscan
PF01472PUAPUA domainFamilyInterproscan
PF00858ASCAmiloride-sensitive sodium channelFamilyInterproscan
PF20806Integrin_A_Ig_3Integrin alpha Ig-like domain 3DomainInterproscan
PF00566RabGAP-TBCRab-GTPase-TBC domainFamilyInterproscan
PF00069PkinaseProtein kinase domainDomainInterproscan
PF13540RCC1_2Regulator of chromosome condensation (RCC1) repeatRepeatInterproscan
PF06179Med22Surfeit locus protein 5 subunit 22 of Mediator complexFamilyInterproscan
PF02931Neur_chan_LBDNeurotransmitter-gated ion-channel ligand binding domainFamilyInterproscan
PF17917RT_RNaseHRNase H-like domain found in reverse transcriptaseDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR006042FamilyXanthine/uracil permeaseInterproscan
IPR006043FamilyNucleobase cation symporter 2 familyInterproscan
IPR002478DomainPUA domainInterproscan
IPR036974Homologous_superfamilyPUA domain superfamilyInterproscan
IPR015947Homologous_superfamilyPUA-like superfamilyInterproscan
IPR001873FamilyEpithelial sodium channelInterproscan
IPR048286DomainIntegrin alpha, third immunoglobulin-like domainInterproscan
IPR018184Conserved_siteIntegrin alpha chain, C-terminal cytoplasmic region, conserved siteInterproscan
IPR032695Homologous_superfamilyIntegrin domain superfamilyInterproscan
IPR035969Homologous_superfamilyRab-GAP-TBC domain superfamilyInterproscan
IPR045913FamilyGTPase-activating protein TBC20/Gyp8-likeInterproscan
IPR000195DomainRab-GAP-TBC domainInterproscan
IPR051997FamilySerine/threonine-protein kinase NEKInterproscan
IPR000408RepeatRegulator of chromosome condensation, RCC1Interproscan
IPR011009Homologous_superfamilyProtein kinase-like domain superfamilyInterproscan
IPR000719DomainProtein kinase domainInterproscan
IPR009091Homologous_superfamilyRegulator of chromosome condensation 1/beta-lactamase-inhibitor protein IIInterproscan
IPR008271Active_siteSerine/threonine-protein kinase, active siteInterproscan
IPR009332FamilyMediator of RNA polymerase II transcription subunit 22Interproscan
IPR006202DomainNeurotransmitter-gated ion-channel ligand-binding domainInterproscan
IPR036734Homologous_superfamilyNeurotransmitter-gated ion-channel ligand-binding domain superfamilyInterproscan
IPR041373DomainReverse transcriptase, RNase H-like domainInterproscan
IPR043502Homologous_superfamilyDNA/RNA polymerase superfamilyInterproscan
IPR050951FamilyRetrovirus-related Pol polyproteinInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR11119XANTHINE-URACIL / VITAMIN C PERMEASE FAMILY MEMBERInterproscan
PTHR11690AMILORIDE-SENSITIVE SODIUM CHANNEL-RELATEDInterproscan
PTHR23220INTEGRIN ALPHAInterproscan
PTHR20913TBC1 DOMAIN FAMILY MEMBER 20/GTPASEInterproscan
PTHR44535PROTEIN CBG16200Interproscan
PTHR12434MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 22Interproscan
PTHR37984PROTEIN CBG26694Interproscan
PTHR46113SNAC DOMAIN-CONTAINING PROTEINInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0016020Cellular ComponentmembraneInterproscan
GO:0022857Molecular Functiontransmembrane transporter activityInterproscan
GO:0055085Biological Processtransmembrane transportInterproscan
GO:0005215Molecular Functiontransporter activityInterproscan
GO:0003723Molecular FunctionRNA bindingInterproscan
GO:0005272Molecular Functionsodium channel activityInterproscan
GO:0005887Cellular Componentplasma membraneInterproscan
GO:0006814Biological Processsodium ion transportInterproscan
GO:0015280Molecular Functionligand-gated sodium channel activityInterproscan
GO:0035725Biological Processsodium ion transmembrane transportInterproscan
GO:0005178Molecular Functionintegrin bindingInterproscan
GO:0007160Biological Processcell-matrix adhesionInterproscan
GO:0007229Biological Processintegrin-mediated signaling pathwayInterproscan
GO:0008305Cellular Componentintegrin complexInterproscan
GO:0009897Cellular Componentexternal side of plasma membraneInterproscan
GO:0033627Biological Processcell adhesion mediated by integrinInterproscan
GO:0098609Biological Processcell-cell adhesionInterproscan
GO:0005096Molecular FunctionGTPase activator activityInterproscan
GO:0005789Cellular Componentendoplasmic reticulum membraneInterproscan
GO:0006888Biological Processendoplasmic reticulum to Golgi vesicle-mediated transportInterproscan
GO:0016192Biological Processvesicle-mediated transportInterproscan
GO:0043547Biological Processpositive regulation of GTPase activityInterproscan
GO:0004672Molecular Functionprotein kinase activityInterproscan
GO:0005524Molecular FunctionATP bindingInterproscan
GO:0006468Biological Processprotein phosphorylationInterproscan
GO:0003712Molecular Functiontranscription coregulator activityInterproscan
GO:0006357Biological Processregulation of transcription by RNA polymerase IIInterproscan
GO:0016592Cellular Componentmediator complexInterproscan
GO:0005230Molecular Functionextracellular ligand-gated monoatomic ion channel activityInterproscan
GO:0006811Biological Processmonoatomic ion transportInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K15139MED22; mediator of RNA polymerase II transcription subunit 22-Ion channelsko04040deepkoala
Transportersko02000deepkoala
Chromosome and associated proteinsko03036deepkoala
Membrane traffickingko04131deepkoala
Transcription machineryko03021deepkoala

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