Gene detail

Detailed information of g9752.t1 in Acropora digitifera

Genomic Location: chr4Alt:29034337...29035433
NR annotation: XP_015757625.1, PREDICTED: transcription factor SOX-14-like [Acropora digitifera]
Species Acropora digitifera · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q32PP9	Transcription factor Sox-14 OS=Danio rerio OX=7955 GN=sox14 PE=2 SV=1
Q9W7R6	Transcription factor SOX-14 OS=Gallus gallus OX=9031 GN=SOX14 PE=2 SV=1
O95416	Transcription factor SOX-14 OS=Homo sapiens OX=9606 GN=SOX14 PE=1 SV=1

Gene family

Family type	Membership / link
Transcription factor family	HMG · all TF in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00505 all species →	HMG_box	HMG (high mobility group) box	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR009071 all species →	Domain	High mobility group box domain	Interproscan
IPR050140 all species →	Family	SRY-related HMG-box transcription factors	Interproscan
IPR036910 all species →	Homologous_superfamily	High mobility group box domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10270 all species →	SOX TRANSCRIPTION FACTOR	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000978 all species →	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981 all species →	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0009653 all species →	Biological Process	anatomical structure morphogenesis	Interproscan
GO:0030154 all species →	Biological Process	cell differentiation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K09267	SOX1S; transcription factor SOX1/3/14/21 (SOX group B)	-	Transcription factors	ko03000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of g9752.t1 across 39 RNA-seq samples of Acropora digitifera. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

39Samples

39TPM > 0

1Conditions

75.5Max TPM

51.6Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
Coral branch	39	39	51.58	75.54

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR23047238	Coral branch	Coral branch	adult	not recorded	SRP416931	75.54
SRR23047227	Coral branch	Coral branch	adult	not recorded	SRP416931	75.24
SRR23047212	Coral branch	Coral branch	adult	not recorded	SRP416931	72.58
SRR23047240	Coral branch	Coral branch	adult	not recorded	SRP416931	71.28
SRR23047234	Coral branch	Coral branch	adult	not recorded	SRP416931	70.40
SRR23047215	Coral branch	Coral branch	adult	not recorded	SRP416931	69.65
SRR23047217	Coral branch	Coral branch	adult	not recorded	SRP416931	68.34
SRR23047214	Coral branch	Coral branch	adult	not recorded	SRP416931	67.80
SRR23047219	Coral branch	Coral branch	adult	not recorded	SRP416931	67.00
SRR23047241	Coral branch	Coral branch	adult	not recorded	SRP416931	66.88
SRR23047230	Coral branch	Coral branch	adult	not recorded	SRP416931	66.52
SRR23047207	Coral branch	Coral branch	adult	not recorded	SRP416931	60.22
SRR23047224	Coral branch	Coral branch	adult	not recorded	SRP416931	58.96
SRR23047206	Coral branch	Coral branch	adult	not recorded	SRP416931	58.73
SRR23047218	Coral branch	Coral branch	adult	not recorded	SRP416931	57.96
SRR23047209	Coral branch	Coral branch	adult	not recorded	SRP416931	56.16
SRR23047232	Coral branch	Coral branch	adult	not recorded	SRP416931	55.93
SRR23047223	Coral branch	Coral branch	adult	not recorded	SRP416931	54.76
SRR23047235	Coral branch	Coral branch	adult	not recorded	SRP416931	53.68
SRR23047225	Coral branch	Coral branch	adult	not recorded	SRP416931	52.57
SRR23047231	Coral branch	Coral branch	adult	not recorded	SRP416931	51.74
SRR23047216	Coral branch	Coral branch	adult	not recorded	SRP416931	50.63
SRR23047237	Coral branch	Coral branch	adult	not recorded	SRP416931	47.13
SRR23047213	Coral branch	Coral branch	adult	not recorded	SRP416931	46.73
SRR23047242	Coral branch	Coral branch	adult	not recorded	SRP416931	46.05
SRR23047228	Coral branch	Coral branch	adult	not recorded	SRP416931	45.07
SRR23047222	Coral branch	Coral branch	adult	not recorded	SRP416931	44.66
SRR23047210	Coral branch	Coral branch	adult	not recorded	SRP416931	43.91
SRR23047233	Coral branch	Coral branch	adult	not recorded	SRP416931	41.93
SRR23047226	Coral branch	Coral branch	adult	not recorded	SRP416931	40.92
SRR23047236	Coral branch	Coral branch	adult	not recorded	SRP416931	38.46
SRR23047208	Coral branch	Coral branch	adult	not recorded	SRP416931	36.40
SRR23047229	Coral branch	Coral branch	adult	not recorded	SRP416931	35.67
SRR23047211	Coral branch	Coral branch	adult	not recorded	SRP416931	32.69
SRR23047221	Coral branch	Coral branch	adult	not recorded	SRP416931	32.56
SRR23047239	Coral branch	Coral branch	adult	not recorded	SRP416931	29.10
SRR23047220	Coral branch	Coral branch	adult	not recorded	SRP416931	28.10
SRR23047244	Coral branch	Coral branch	adult	not recorded	SRP416931	21.39
SRR23047243	Coral branch	Coral branch	adult	not recorded	SRP416931	18.41

Source: CnidoSite RNA-seq expression matrices (ADIGI_TPM, StringTie quantification over 39 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.