Gene detail

Detailed information of g976.t1 in Calvadosia cruxmelitensis

Genomic Location: not available for this species
NR annotation: XP_044165354.1, 52 kDa repressor of the inhibitor of the protein kinase-like [Acropora millepora]
Species Calvadosia cruxmelitensis · all data for this species · gene families

Sequence

Sequence data are not available for Calvadosia cruxmelitensis.
Nucleotide and protein sequences are provided for the species whose genome annotation is complete (see annotated genomes); for this species only the assembly is archived. The functional annotation below is likewise unavailable.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q96RY5	Protein cramped-like OS=Homo sapiens OX=9606 GN=CRAMP1 PE=1 SV=3
Q6PG95	Protein cramped-like OS=Mus musculus OX=10090 GN=Cramp1 PE=1 SV=3
Q8MX88	Protein cramped OS=Drosophila sechellia OX=7238 GN=crm PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000024 (this species only)
Orthogroup (gene family)	OG0000033 (this species only)
Orthogroup (gene family)	OG0000038 (this species only)
Orthogroup (gene family)	OG0001127 (this species only)
Orthogroup (gene family)	OG0003174 (this species only)
Orthogroup (gene family)	OG0005367 (this species only)
Orthogroup (gene family)	OG0016120 (this species only)
Orthogroup (gene family)	OG0019276 (this species only)
Orthogroup (gene family)	OG0041262 (this species only)
Orthogroup (gene family)	OG0080378 (this species only)
Orthogroup (gene family)	OG0172457 (this species only)
Orthogroup (gene family)	OG0173166 (this species only)
Orthogroup (gene family)	OG0173438 (this species only)
Orthogroup (gene family)	OG0174425 (this species only)
Orthogroup (gene family)	OG0174553 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00589 all species →	Phage_integrase	Phage integrase family	Family	Interproscan
PF08542 all species →	Rep_fac_C	Replication factor C C-terminal domain	Domain	Interproscan
PF13976 all species →	gag_pre-integrs	GAG-pre-integrase domain	Domain	Interproscan
PF14223 all species →	Retrotran_gag_2	gag-polypeptide of LTR copia-type	Family	Interproscan
PF05699 all species →	Dimer_Tnp_hAT	hAT family C-terminal dimerisation region	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002104 all species →	Domain	Integrase, catalytic domain	Interproscan
IPR010998 all species →	Homologous_superfamily	Integrase/recombinase, N-terminal	Interproscan
IPR043502 all species →	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR011010 all species →	Homologous_superfamily	DNA breaking-rejoining enzyme, catalytic core	Interproscan
IPR013762 all species →	Homologous_superfamily	Integrase-like, catalytic domain superfamily	Interproscan
IPR038911 all species →	Family	Sodium channel and clathrin linker 1	Interproscan
IPR008921 all species →	Homologous_superfamily	DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal	Interproscan
IPR050238 all species →	Family	DNA Replication and Repair Clamp Loader Complex	Interproscan
IPR013748 all species →	Domain	Replication factor C, C-terminal	Interproscan
IPR001584 all species →	Domain	Integrase, catalytic core	Interproscan
IPR036397 all species →	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR012337 all species →	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR025724 all species →	Domain	GAG-pre-integrase domain	Interproscan
IPR052958 all species →	Family	Interferon-induced PKR regulator	Interproscan
IPR008906 all species →	Domain	HAT, C-terminal dimerisation domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR35617 all species →	PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN	Interproscan
PTHR35970 all species →	SODIUM CHANNEL AND CLATHRIN LINKER 1	Interproscan
PTHR11669 all species →	REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT	Interproscan
PTHR21677 all species →	CRAMPED PROTEIN	Interproscan
PTHR42648 all species →	TRANSPOSASE, PUTATIVE-RELATED	Interproscan
PTHR46289 all species →	52 KDA REPRESSOR OF THE INHIBITOR OF THE PROTEIN KINASE-LIKE PROTEIN-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0006310 all species →	Biological Process	DNA recombination	Interproscan
GO:0015074 all species →	Biological Process	DNA integration	Interproscan
GO:0005814 all species →	Cellular Component	centriole	Interproscan
GO:0045162 all species →	Biological Process	clustering of voltage-gated sodium channels	Interproscan
GO:0060271 all species →	Biological Process	cilium assembly	Interproscan
GO:0006260 all species →	Biological Process	DNA replication	Interproscan
GO:0003689 all species →	Molecular Function	DNA clamp loader activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005663 all species →	Cellular Component	DNA replication factor C complex	Interproscan
GO:0006261 all species →	Biological Process	DNA-templated DNA replication	Interproscan
GO:0006281 all species →	Biological Process	DNA repair	Interproscan
GO:0003682 all species →	Molecular Function	chromatin binding	Interproscan
GO:0007389 all species →	Biological Process	pattern specification process	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0046983 all species →	Molecular Function	protein dimerization activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K19935	SYCN; syncollin	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.