Genomic Location: not available for this species
NR annotation: CAB4026785.1, Hypothetical predicted protein, partial [Paramuricea clavata]
Species Calvadosia cruxmelitensis · all data for this species · gene families
| UniProt accession | Description |
|---|---|
| Q9C0K3 | Actin-related protein 3C OS=Homo sapiens OX=9606 GN=ACTR3C PE=1 SV=1 |
| O73723 | Actin-related protein 3 OS=Takifugu rubripes OX=31033 GN=actr3 PE=3 SV=1 |
| Q90WD0 | Actin-related protein 3 OS=Gallus gallus OX=9031 GN=ACTR3 PE=2 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0000018 (this species only) · gene tree & orthology |
| Orthogroup (gene family) | OG0003101 (this species only) · gene tree & orthology |
| Orthogroup (gene family) | OG0003109 (this species only) · gene tree & orthology |
| Orthogroup (gene family) | OG0003821 (this species only) · gene tree & orthology |
| Orthogroup (gene family) | OG0006637 (this species only) · gene tree & orthology |
| Orthogroup (gene family) | OG0008838 (this species only) · gene tree & orthology |
| Orthogroup (gene family) | OG0012037 (this species only) · gene tree & orthology |
| Orthogroup (gene family) | OG0014997 (this species only) · gene tree & orthology |
| Orthogroup (gene family) | OG0016696 (this species only) · gene tree & orthology |
| Orthogroup (gene family) | OG0021524 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF20691 all species → | TAGT | TET-Associated Glycosyltransferase | Domain | Interproscan |
| PF20692 all species → | cpSF2-GREB1 | Circularly permuted SF2 helicase found in GREB1 proteins | Domain | Interproscan |
| PF20267 all species → | GREB1_C | GREB1 C-terminal region | Domain | Interproscan |
| PF13385 all species → | Laminin_G_3 | Concanavalin A-like lectin/glucanases superfamily | Domain | Interproscan |
| PF00431 all species → | CUB | CUB domain | Domain | Interproscan |
| PF07984 all species → | NTP_transf_7 | Nucleotidyltransferase | Domain | Interproscan |
| PF00621 all species → | RhoGEF | RhoGEF domain | Domain | Interproscan |
| PF00022 all species → | Actin | Actin | Family | Interproscan |
| PF00069 all species → | Pkinase | Protein kinase domain | Domain | Interproscan |
| PF15782 all species → | GREB1_N | GREB1 N-terminal domain | Domain | Interproscan |
| PF00078 all species → | RVT_1 | Reverse transcriptase (RNA-dependent DNA polymerase) | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR049100 all species → | Domain | TET-Associated Glycosyltransferase | Interproscan |
| IPR028422 all species → | Family | GREB1 | Interproscan |
| IPR048657 all species → | Domain | GREB1-like, circularly permuted SF2 helicase domain | Interproscan |
| IPR046927 all species → | Domain | GREB1-like, C-terminal domain | Interproscan |
| IPR000859 all species → | Domain | CUB domain | Interproscan |
| IPR006558 all species → | Domain | LamG-like jellyroll fold | Interproscan |
| IPR013320 all species → | Homologous_superfamily | Concanavalin A-like lectin/glucanase domain superfamily | Interproscan |
| IPR035914 all species → | Homologous_superfamily | Spermadhesin, CUB domain superfamily | Interproscan |
| IPR029865 all species → | Family | Dyslexia-associated protein KIAA0319-like | Interproscan |
| IPR012937 all species → | Family | Terminal nucleotidyltransferase | Interproscan |
| IPR035899 all species → | Homologous_superfamily | Dbl homology (DH) domain superfamily | Interproscan |
| IPR011009 all species → | Homologous_superfamily | Protein kinase-like domain superfamily | Interproscan |
| IPR000719 all species → | Domain | Protein kinase domain | Interproscan |
| IPR000219 all species → | Domain | Dbl homology (DH) domain | Interproscan |
| IPR004000 all species → | Family | Actin family | Interproscan |
| IPR051480 all species → | Family | Endocytic & GEF Adapter | Interproscan |
| IPR043129 all species → | Homologous_superfamily | ATPase, nucleotide binding domain | Interproscan |
| IPR046926 all species → | Domain | GREB1, N-terminal domain | Interproscan |
| IPR000477 all species → | Domain | Reverse transcriptase domain | Interproscan |
| IPR043502 all species → | Homologous_superfamily | DNA/RNA polymerase superfamily | Interproscan |
| IPR043128 all species → | Homologous_superfamily | Reverse transcriptase/Diguanylate cyclase domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR15720 all species → | GREB1-RELATED | Interproscan |
| PTHR46182 all species → | FI19480P1 | Interproscan |
| PTHR31511 all species → | PROTEIN CBG23764 | Interproscan |
| PTHR12974 all species → | PRION-LIKE- Q/N-RICH -DOMAIN-BEARING PROTEIN PROTEIN 44 | Interproscan |
| PTHR46006 all species → | RHO GUANINE NUCLEOTIDE EXCHANGE FACTOR AT 64C, ISOFORM A | Interproscan |
| PTHR19446 all species → | REVERSE TRANSCRIPTASES | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0007275 all species → | Biological Process | multicellular organism development | Interproscan |
| GO:0001764 all species → | Biological Process | neuron migration | Interproscan |
| GO:0016020 all species → | Cellular Component | membrane | Interproscan |
| GO:0031410 all species → | Cellular Component | cytoplasmic vesicle | Interproscan |
| GO:1990817 all species → | Molecular Function | poly(A) RNA polymerase activity | Interproscan |
| GO:0003723 all species → | Molecular Function | RNA binding | Interproscan |
| GO:0048255 all species → | Biological Process | mRNA stabilization | Interproscan |
| GO:0004672 all species → | Molecular Function | protein kinase activity | Interproscan |
| GO:0005524 all species → | Molecular Function | ATP binding | Interproscan |
| GO:0006468 all species → | Biological Process | protein phosphorylation | Interproscan |
| GO:0005085 all species → | Molecular Function | guanyl-nucleotide exchange factor activity | Interproscan |
| GO:0035025 all species → | Biological Process | positive regulation of Rho protein signal transduction | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K23034 | TENT5C, FAM46C; terminal nucleotidyltransferase 5C | EC:2.7.7.19 | Messenger RNA biogenesis | ko03019 | deepkoala |
Genes whose expression across the transcriptome samples of Calvadosia cruxmelitensis tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Calvadosia cruxmelitensis, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | sequence table not available | – |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | sequence table not available | – |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
