Gene detail

Detailed information of g9811.t1 in Tripedalia maipoensis

Genomic Location: scaffold_6:24291339...24345323
NR annotation: no NCBI-NR hit recorded
Species Tripedalia maipoensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

g9811.t1

ATGACTTGGATTTTCTGGGCTCAGAAAGAAATCATTTATGGATCTTGCGGGCATGTCGGGAGTGCCTCTCCCTCAGGACAACAACTACTACAAGGAGCAGTCTCCAGGTGCTGCCATCTTAGTCTATCGACAACTTGTACTGCAGTTTGCAGGGCTATACCACCAGGAAAGATAGCGTTACAGAACATTGAAGTTCTCCTAGAAACCTGCAACTCTGGGGAGGCTTCGTTTTGGAAATGCATGAACGGATCAATGCAAGAGCTGATGGGCTCCTCTGGTCTTCATCATTGTTGCTCCAAAACCGAAGGCGTCGCTTGCCGATTCGCATGCTACTTTTCCCAATCACCAATACTAATGGAGAAAATTTGTCAACAGGAGAGCAGGAATAAACTGCAACGTTGCCTAGGAAGAATGCAAGTTTCCTCGTTATGCTGTGTCGATACAAAGGATATTGCTTGCTACTATACCTGTCTCAAGATGTTTTCAACTGATAAAGGGCCCAGCCTCATGGACGTCAATAACTTGACTATTCATTGCCAGGAAACGCCATCTATTGCGCAGTGCGTCAAAAATTTCAGCAACAATTCCCATGGAGGCATCGGTTTGGGAAGATGCTGTCGCTTTAGTGAGGTCGCGCGATGCAAAGCGACTTGTAACAAAATCACAAGCCAACAGGCAGGAACCAAAAAGCAGTTCACTCAATTAGTGAAAGATTGTGGATTCCCCTTACCGCAGAACAAATTATGGGGCTGCCTACTGAAGTCTTCTGCTGAGCAAATTTCTCAGAGAAAGCACGATGGCAACACAGGTGTCAAGCTCATCACCAATCACTGCTGTTCTCAGGCATCAACAGAGCGATGTCAAACGTGGTGCCACAAGATACTTCAGATGCCCGCAAACGTGAGACATATGGGTATGCTGTCATCAGACTGCATCAGCAAGCCTTCAGAGCGCAAATTAGCCGTCTGCATGAACGATGTCATTGATTCTTGCAATTATGGCTGTGATAAAGGGGTGAAGCTTTGTGCTGCGTTTGTATCAAGACCTTTTCAGCTGTACCGTCGTTGCAATGCAAGAGGCGAATTGATAGCACAATACCTCCTTACTAGATGGGCGTCTGGTCATGTTGTTTACGGTTCTCTGAAATTTGAGATCCATGATGTGAATGCTTGCCTTCCAGATATGTGGAAGGGAGTAGCTTGTTGGCTTGCTCTTCAGCCTTGCACCAGAACCTCAAATCAGCTGCCTATTTGCTGGAATGACTGTGTAGAGCTGCTTAGCAACTGCCTGAAGCACACTTCTGGGAAAGAAGGATCTTCAGCTGAGCAAATTTGCTCCGTCCTTGTCCCAGACTGGGATAGCAAGGACTGTTACTCACTGAAACAAAACACAGTGAGTAACACAGAGGAGCCTTTTCACCTGGAGACACCTTGTCGCCCGAATCCATGTAGAGGCTCGGAACTCTGCGTTGTCAAGTTAAGTTGCACAGGGAGCCACTACAACTGCACTAAGCATGTATGCTTACCAGGATGCCATGTGCCCAAGACTTCCCTTATTGTGCCTCAAAACAGTTACCTTAAGGTCATCTACCCAGAAGGAAGGCAAAAGGTGAGCAAAGTTTGTCAATGCCTACGAGAAAAGGGATACCCCGAGGGATTAAGCCTTCAATGTATTGATTTTGGATACAAAAATCAGAGGAGTTGCCTTACAGAAGCCGGAATTTTCCGTCATGGAGAAAAGTTTCATTTGGACTGCAACTTCTGCACTTGTTCCAATGGAGAGTACCTCTGCACGATGAATCAATGTGGGCGTGGCGAAGGCAATGACCAAGCCCAAGTTTCAGGTTTTCCGTGTCAATGCGAGGGTGCCTACAGTCCAGTGTGCAGTACAAGTGGGCGCACATACAGTAACCTGTGCCTTGCCAGGTGTGCTGGAGAGAGCGACAATGAGCTAACCATTGGGGATTGTTGGAGTATTCCTGCCTGCTTCAATCACTCTTGTCCCAAGCATTACAGTTGCGCAACACGAAGGAGAACATGCCTCGAAGCCGATGTTGTGTGCCCGCAGCATAAATGTTATCACGTTGAGGTTACCGACAACTACCCTCAATTGGAATATAAAGGCGAGAGGAAGGTTCACACCAGTAGTAAAATGGTATGCGGAATGGATGGAGTAACGTACCAAGATGAGGATGTAGATACAGCTATGGTACCTGTCGACTACCATGGAGCCTGTTTAATTCCTGCTCAGTCGGATCAGAAGCAGCACAGGTGCAAAGATGTTCGTTGCTCACCAACTTACATCAAAAGCTGCCGACAGTACAAGCCAAAGTTTTCATGTTGCTCGACTTGCGGAGCCATTATTTTGGCTCTGTTTAGCAAAAGAGAATTGAAAGATCACAGGTTGCTTATAGACCAGGATGCAGTCACTGTACAACAAATTGTATGGGAACTGAGACAACTCTTGGAGGTGGTTCACTGTGACGTACGAGGTTACCTCAGTGCAGAGGAGGCCCTTATAATCATAATCGAGCCGAGTGTCGATAGTGAGGCAGATAAAAGAATAAAGTTATTCAAGCTCCAAGCATGTCATCGAGAGGCGGAGAGAATTGTCGGGCTCTACGATGTACATAGCCCCTTGGTGAGCACAAATTATTACCTTTCCTTTCTCAAAGCGCTTCGTCTGGAAAGTTCGTTTGACACCCAAAGCAAGGCGAGTATGGCCTCTAGCTCTTATATTGTGTTCTATGTGCTCGGTTCGACTTTCCTTAGGATTCTCCTATGA

Transcript

g9811.t1

Protein

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004799 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00050 all species →	Kazal_1	Kazal-type serine protease inhibitor domain	Domain	Interproscan
PF05375 all species →	Pacifastin_I	Pacifastin inhibitor (LCMII)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002350 all species →	Domain	Kazal domain	Interproscan
IPR036058 all species →	Homologous_superfamily	Kazal domain superfamily	Interproscan
IPR008037 all species →	Domain	Pacifastin domain	Interproscan
IPR039016 all species →	Family	Reversion-inducing cysteine-rich protein with Kazal motifs	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13487 all species →	SERINE PROTEASE INHIBITOR	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0030414 all species →	Molecular Function	peptidase inhibitor activity	Interproscan
GO:0004866 all species →	Molecular Function	endopeptidase inhibitor activity	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0008191 all species →	Molecular Function	metalloendopeptidase inhibitor activity	Interproscan
GO:0030198 all species →	Biological Process	extracellular matrix organization	Interproscan
GO:1904684 all species →	Biological Process	negative regulation of metalloendopeptidase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K17461	RECK, ST15; reversion-inducing-cysteine-rich protein with kazal motifs	-	MicroRNAs in cancer	ko05206	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Tripedalia maipoensis tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Tripedalia maipoensis, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

Analysis	What it does	Status
Primer design	Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.	template found	open →
BLAST	Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.	template found	open →
Expression heatmap	Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.	no expression matrix	–
Gene family / orthogroup	Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.		open →
Gene set analysis	Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.		open →