Gene detail

Detailed information of g982.t1 in Calvadosia cruxmelitensis

Genomic Location: not available for this species
NR annotation: XP_027038784.1, uncharacterized protein LOC113667187 [Pocillopora damicornis]
Species Calvadosia cruxmelitensis · all data for this species · gene families

Sequence

Sequence data are not available for Calvadosia cruxmelitensis.
Nucleotide and protein sequences are provided for the species whose genome annotation is complete (see annotated genomes); for this species only the assembly is archived. The functional annotation below is likewise unavailable.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9ES03	T-box transcription factor TBX20 OS=Mus musculus OX=10090 GN=Tbx20 PE=2 SV=3
Q8UW76	T-box transcription factor TBX20 OS=Gallus gallus OX=9031 GN=TBX20 PE=2 SV=1
Q9UMR3	T-box transcription factor TBX20 OS=Homo sapiens OX=9606 GN=TBX20 PE=1 SV=4

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000077 (this species only)
Orthogroup (gene family)	OG0000393 (this species only)
Orthogroup (gene family)	OG0002726 (this species only)
Orthogroup (gene family)	OG0003565 (this species only)
Orthogroup (gene family)	OG0005208 (this species only)
Orthogroup (gene family)	OG0008186 (this species only)
Orthogroup (gene family)	OG0011053 (this species only)
Orthogroup (gene family)	OG0014099 (this species only)
Orthogroup (gene family)	OG0016428 (this species only)
Orthogroup (gene family)	OG0016716 (this species only)
Orthogroup (gene family)	OG0016981 (this species only)
Orthogroup (gene family)	OG0021357 (this species only)
Orthogroup (gene family)	OG0171823 (this species only)
Orthogroup (gene family)	OG0172400 (this species only)
Orthogroup (gene family)	OG0174466 (this species only)
Transcription factor family	zf-C2H2 · all TF in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00096 all species →	zf-C2H2	Zinc finger, C2H2 type	Domain	Interproscan
PF01936 all species →	NYN	NYN domain	Domain	Interproscan
PF00001 all species →	7tm_1	7 transmembrane receptor (rhodopsin family)	Family	Interproscan
PF09619 all species →	YscW	Type III secretion system lipoprotein chaperone (YscW)	Family	Interproscan
PF00907 all species →	T-box	T-box	Domain	Interproscan
PF13499 all species →	EF-hand_7	EF-hand domain pair	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013087 all species →	Domain	Zinc finger C2H2-type	Interproscan
IPR036236 all species →	Homologous_superfamily	Zinc finger C2H2 superfamily	Interproscan
IPR003961 all species →	Domain	Fibronectin type III	Interproscan
IPR021139 all species →	Domain	NYN domain	Interproscan
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR036116 all species →	Homologous_superfamily	Fibronectin type III superfamily	Interproscan
IPR000276 all species →	Family	G protein-coupled receptor, rhodopsin-like	Interproscan
IPR017452 all species →	Domain	GPCR, rhodopsin-like, 7TM	Interproscan
IPR039366 all species →	Family	Type 3 secretion system pilotin	Interproscan
IPR001007 all species →	Domain	VWFC domain	Interproscan
IPR052624 all species →	Family	Cysteine-rich motor neuron 1	Interproscan
IPR046360 all species →	Domain	T-box transcription factor, DNA-binding domain	Interproscan
IPR001699 all species →	Family	T-box transcription factor	Interproscan
IPR036960 all species →	Homologous_superfamily	T-box superfamily	Interproscan
IPR008967 all species →	Homologous_superfamily	p53-like transcription factor, DNA-binding domain superfamily	Interproscan
IPR002048 all species →	Domain	EF-hand domain	Interproscan
IPR018247 all species →	Binding_site	EF-Hand 1, calcium-binding site	Interproscan
IPR011992 all species →	Homologous_superfamily	EF-hand domain pair	Interproscan
IPR043502 all species →	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24393 all species →	ZINC FINGER PROTEIN	Interproscan
PTHR24246 all species →	OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR	Interproscan
PTHR46439 all species →	CYSTEINE-RICH MOTOR NEURON 1 PROTEIN	Interproscan
PTHR11267 all species →	T-BOX PROTEIN-RELATED	Interproscan
PTHR46670 all species →	ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0004540 all species →	Molecular Function	RNA nuclease activity	Interproscan
GO:0004930 all species →	Molecular Function	G protein-coupled receptor activity	Interproscan
GO:0005887 all species →	Cellular Component	plasma membrane	Interproscan
GO:0007186 all species →	Biological Process	G protein-coupled receptor signaling pathway	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0003700 all species →	Molecular Function	DNA-binding transcription factor activity	Interproscan
GO:0045893 all species →	Biological Process	positive regulation of DNA-templated transcription	Interproscan
GO:0000978 all species →	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981 all species →	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0001708 all species →	Biological Process	cell fate specification	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K04450	ATF2, CREBP1; cyclic AMP-dependent transcription factor ATF-2	-	Transcription factors	ko03000	deepkoala
K22540	HTD2; 3-hydroxyacyl-thioester dehydratase, animal type	EC:4.2.1.-	Fatty acid biosynthesis	ko00061	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.