Gene detail

Detailed information of g983.t1 in Calvadosia cruxmelitensis

Genomic Location: not available for this species
NR annotation: XP_055323917.1, tetratricopeptide repeat protein 28 [Sitodiplosis mosellana]
Species Calvadosia cruxmelitensis · all data for this species · gene families

Sequence

Sequence data are not available for Calvadosia cruxmelitensis.
Nucleotide and protein sequences are provided for the species whose genome annotation is complete (see annotated genomes); for this species only the assembly is archived. The functional annotation below is likewise unavailable.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q96AY4	Tetratricopeptide repeat protein 28 OS=Homo sapiens OX=9606 GN=TTC28 PE=1 SV=4
Q80XJ3	Tetratricopeptide repeat protein 28 OS=Mus musculus OX=10090 GN=Ttc28 PE=1 SV=3
O15042	U2 snRNP-associated SURP motif-containing protein OS=Homo sapiens OX=9606 GN=U2SURP PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000015 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0000083 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0001864 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0002531 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0002613 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0003546 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0003842 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0005280 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0011567 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0049982 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00133 all species →	tRNA-synt_1	tRNA synthetases class I (I, L, M and V)	Domain	Interproscan
PF00078 all species →	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan
PF01805 all species →	Surp	Surp module	Family	Interproscan
PF00076 all species →	RRM_1	RNA recognition motif	Domain	Interproscan
PF04818 all species →	CID	CID domain	Repeat	Interproscan
PF08312 all species →	cwf21	cwf21 domain	Domain	Interproscan
PF05860 all species →	TPS	TPS secretion domain	Repeat	Interproscan
PF12317 all species →	IFT46_B_C	Intraflagellar transport complex B protein 46 C terminal	Family	Interproscan
PF13181 all species →	TPR_8	Tetratricopeptide repeat	Repeat	Interproscan
PF12770 all species →	CHAT	CHAT domain	Domain	Interproscan
PF13424 all species →	TPR_12	Tetratricopeptide repeat	Repeat	Interproscan
PF13176 all species →	TPR_7	Tetratricopeptide repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR009008 all species →	Homologous_superfamily	Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain	Interproscan
IPR002300 all species →	Domain	Aminoacyl-tRNA synthetase, class Ia	Interproscan
IPR014729 all species →	Homologous_superfamily	Rossmann-like alpha/beta/alpha sandwich fold	Interproscan
IPR023586 all species →	Family	Isoleucine-tRNA ligase, type 2	Interproscan
IPR000477 all species →	Domain	Reverse transcriptase domain	Interproscan
IPR043502 all species →	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR008942 all species →	Homologous_superfamily	ENTH/VHS	Interproscan
IPR035979 all species →	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR035009 all species →	Domain	SR140, RNA recognition motif	Interproscan
IPR012677 all species →	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR006569 all species →	Domain	CID domain	Interproscan
IPR035967 all species →	Homologous_superfamily	SWAP/Surp superfamily	Interproscan
IPR047488 all species →	Domain	U2-associated protein SR140, cwf21 domain	Interproscan
IPR000061 all species →	Domain	SWAP/Surp	Interproscan
IPR000504 all species →	Domain	RNA recognition motif domain	Interproscan
IPR051485 all species →	Family	SR-related and CTD-associated factor	Interproscan
IPR013170 all species →	Domain	mRNA splicing factor Cwf21 domain	Interproscan
IPR011050 all species →	Homologous_superfamily	Pectin lyase fold/virulence factor	Interproscan
IPR012334 all species →	Homologous_superfamily	Pectin lyase fold	Interproscan
IPR008638 all species →	Domain	Filamentous haemagglutinin FhaB/tRNA nuclease CdiA-like, TPS domain	Interproscan
IPR050909 all species →	Family	Bacterial Autotransporter Virulence Factors	Interproscan
IPR022088 all species →	Family	Intraflagellar transport complex B protein 46	Interproscan
IPR019734 all species →	Repeat	Tetratricopeptide repeat	Interproscan
IPR011990 all species →	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR024983 all species →	Domain	CHAT domain	Interproscan
IPR052699 all species →	Family	Regulatory & Mitotic Spindle Associated	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR42780 all species →	SOLEUCYL-TRNA SYNTHETASE	Interproscan
PTHR46670 all species →	ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN	Interproscan
PTHR23140 all species →	RNA PROCESSING PROTEIN LD23810P	Interproscan
PTHR12338 all species →	AUTOTRANSPORTER	Interproscan
PTHR13376 all species →	UNCHARACTERIZED	Interproscan
PTHR10098 all species →	RAPSYN-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0002161 all species →	Molecular Function	aminoacyl-tRNA editing activity	Interproscan
GO:0006418 all species →	Biological Process	tRNA aminoacylation for protein translation	Interproscan
GO:0000166 all species →	Molecular Function	nucleotide binding	Interproscan
GO:0004812 all species →	Molecular Function	aminoacyl-tRNA ligase activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0004822 all species →	Molecular Function	isoleucine-tRNA ligase activity	Interproscan
GO:0006428 all species →	Biological Process	isoleucyl-tRNA aminoacylation	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0006396 all species →	Biological Process	RNA processing	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005813 all species →	Cellular Component	centrosome	Interproscan
GO:0030992 all species →	Cellular Component	intraciliary transport particle B	Interproscan
GO:0031514 all species →	Cellular Component	motile cilium	Interproscan
GO:0042073 all species →	Biological Process	intraciliary transport	Interproscan
GO:0060271 all species →	Biological Process	cilium assembly	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K12842	SR140; U2-associated protein SR140	-	Spliceosome	ko03041	deepkoala
K19682	IFT46; intraflagellar transport protein 46	-	Cilium and associated proteins	ko03037	deepkoala
K24936	TTC28; tetratricopeptide repeat protein 28	-	Cilium and associated proteins	ko03037	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.