Detailed information of g983.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: XP_055323917.1, tetratricopeptide repeat protein 28 [Sitodiplosis mosellana]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q96AY4Tetratricopeptide repeat protein 28 OS=Homo sapiens OX=9606 GN=TTC28 PE=1 SV=4
Q80XJ3Tetratricopeptide repeat protein 28 OS=Mus musculus OX=10090 GN=Ttc28 PE=1 SV=3
O15042U2 snRNP-associated SURP motif-containing protein OS=Homo sapiens OX=9606 GN=U2SURP PE=1 SV=2

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00133tRNA-synt_1tRNA synthetases class I (I, L, M and V)DomainInterproscan
PF00078RVT_1Reverse transcriptase (RNA-dependent DNA polymerase)DomainInterproscan
PF01805SurpSurp moduleFamilyInterproscan
PF00076RRM_1RNA recognition motifDomainInterproscan
PF04818CIDCID domainRepeatInterproscan
PF08312cwf21cwf21 domainDomainInterproscan
PF05860TPSTPS secretion domainRepeatInterproscan
PF12317IFT46_B_CIntraflagellar transport complex B protein 46 C terminalFamilyInterproscan
PF13181TPR_8Tetratricopeptide repeatRepeatInterproscan
PF12770CHATCHAT domainDomainInterproscan
PF13424TPR_12Tetratricopeptide repeatRepeatInterproscan
PF13176TPR_7Tetratricopeptide repeatRepeatInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR009008Homologous_superfamilyValyl/Leucyl/Isoleucyl-tRNA synthetase, editing domainInterproscan
IPR002300DomainAminoacyl-tRNA synthetase, class IaInterproscan
IPR014729Homologous_superfamilyRossmann-like alpha/beta/alpha sandwich foldInterproscan
IPR023586FamilyIsoleucine-tRNA ligase, type 2Interproscan
IPR000477DomainReverse transcriptase domainInterproscan
IPR043502Homologous_superfamilyDNA/RNA polymerase superfamilyInterproscan
IPR008942Homologous_superfamilyENTH/VHSInterproscan
IPR035979Homologous_superfamilyRNA-binding domain superfamilyInterproscan
IPR035009DomainSR140, RNA recognition motifInterproscan
IPR012677Homologous_superfamilyNucleotide-binding alpha-beta plait domain superfamilyInterproscan
IPR006569DomainCID domainInterproscan
IPR035967Homologous_superfamilySWAP/Surp superfamilyInterproscan
IPR047488DomainU2-associated protein SR140, cwf21 domainInterproscan
IPR000061DomainSWAP/SurpInterproscan
IPR000504DomainRNA recognition motif domainInterproscan
IPR051485FamilySR-related and CTD-associated factorInterproscan
IPR013170DomainmRNA splicing factor Cwf21 domainInterproscan
IPR011050Homologous_superfamilyPectin lyase fold/virulence factorInterproscan
IPR012334Homologous_superfamilyPectin lyase foldInterproscan
IPR008638DomainFilamentous haemagglutinin FhaB/tRNA nuclease CdiA-like, TPS domainInterproscan
IPR050909FamilyBacterial Autotransporter Virulence FactorsInterproscan
IPR022088FamilyIntraflagellar transport complex B protein 46Interproscan
IPR019734RepeatTetratricopeptide repeatInterproscan
IPR011990Homologous_superfamilyTetratricopeptide-like helical domain superfamilyInterproscan
IPR024983DomainCHAT domainInterproscan
IPR052699FamilyRegulatory & Mitotic Spindle AssociatedInterproscan
IPR027417Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR42780SOLEUCYL-TRNA SYNTHETASEInterproscan
PTHR46670ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEINInterproscan
PTHR23140RNA PROCESSING PROTEIN LD23810PInterproscan
PTHR12338AUTOTRANSPORTERInterproscan
PTHR13376UNCHARACTERIZEDInterproscan
PTHR10098RAPSYN-RELATEDInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0002161Molecular Functionaminoacyl-tRNA editing activityInterproscan
GO:0006418Biological ProcesstRNA aminoacylation for protein translationInterproscan
GO:0000166Molecular Functionnucleotide bindingInterproscan
GO:0004812Molecular Functionaminoacyl-tRNA ligase activityInterproscan
GO:0005524Molecular FunctionATP bindingInterproscan
GO:0004822Molecular Functionisoleucine-tRNA ligase activityInterproscan
GO:0006428Biological Processisoleucyl-tRNA aminoacylationInterproscan
GO:0003676Molecular Functionnucleic acid bindingInterproscan
GO:0003723Molecular FunctionRNA bindingInterproscan
GO:0006396Biological ProcessRNA processingInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0005813Cellular ComponentcentrosomeInterproscan
GO:0030992Cellular Componentintraciliary transport particle BInterproscan
GO:0031514Cellular Componentmotile ciliumInterproscan
GO:0042073Biological Processintraciliary transportInterproscan
GO:0060271Biological Processcilium assemblyInterproscan
GO:0005515Molecular Functionprotein bindingInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K19682IFT46; intraflagellar transport protein 46-Cilium and associated proteinsko03037deepkoala
Spliceosomeko03041deepkoala
Cilium and associated proteinsko03037deepkoala

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