Gene detail

Detailed information of g9857.t1 in Tripedalia maipoensis

Genomic Location: scaffold_6:26521867...26567722
NR annotation: no NCBI-NR hit recorded
Species Tripedalia maipoensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

g9857.t1

ATGGAAGGTCTTAGTAATGTGAACCCTGTAACGGTTCAAGGTACCAACGACTCAAGCATTGTTAGTAAAGCCTCAATGTCACACATGGGTTATTTTGGCGACCCCTTCGTCTCACTCTTTATACAAAAGATGAAAAGGCGATCCCCTTTGATTAACAGGGGCTATTACATTCGGCAGAGAGCGATAGACCACTTCATCACTGGTTTTCTTCAAAGTGTTTGCCGTGGAGGGAAGGAAACACAAATCGTTTCACTTGGGGCTGGCTTTGATGCCACTTACTTCAGGCTTAAGTCTGAAGGGCTCTTGAATCACAGTGTCTTTTTTGAGATTGATTATCCAGAAGTTGTAAATAGAAAGACAAAACTTATAATGAATACTGTTGCCTTAATAACTTTTTTGAAGAGCTGCAAGATGTTACCAATAGGACTTGATTCAATTGACTACAGACTGGTAGGATGCGACCTCTGCGATTTGCACAAACTTGAAACAGACCTATGCAATCGCTGCATAAAGTTTGATGTTCCTACATTTTTCTTATCCGAGTGTGTTATGACTTACATGGAACCTGAAAAATCCTCAGCCCTTGTGGAATGGGTGTCCAGTAAATTCCAGAATGCGATATTTGTGTGCTACGAGCAGATTTATCCTGACGACGCCTTTGGGCAGGTGATGCAAAAGCATTTTATTAAACTGCAGTCACCTCTTCGAGCCATTAGAAAATATCCTACCCTGGCTCATCAGACAGAGAGATACAAGAAACGGGGATGGGATTTCACAAAAGCTCTAGACATGAACCACTTTTATTTGAACTACGTATCAAAAGAAGAGAAGGCAAAGATAGATAATCTTGAACCATTTGATGAGTTTGAGGAGTGGCATCTAAAGTGCTCTCACTATGCCATTGTAGTGGCTGCTAAAGGTAGCCTCAGACAATCAGTGGAAACTTTACTCCATACCAAGCAATCATTGATTTCGGGGAATCAGTCAAGCATTTTGCCGTCTTCATCTTTCAAGTTGATCACACTTGAAAATGAAGGCATTCAAAGATTCGGTCACTGTTGTACAAGTATTGGGGCAGCGGACGTACTCGTTTGTGGCGGAACTGGTGTTTATAATGGGAAACACATTCGACTTCGGAACTGTTTCACTTTAAAACTACCCACAGGCTGGCCAGTGGACCCTGATGGTATTTCGTTCTCCACTGTTTCTGATGTGCTTCCAGAGCCACGACTCTTCGCTTCACTCAGTACGTTGAATGACACTAAGTGCCTCGTATTTGGTGGTCGAAAATCGCCTGTGCAAGCTTTTGCTTCTCCAATTATGTTGGAAGTAGATCGTCTTCAGAAACAAAGTGATCGCTTTTCTTCTGTCAAGCTGCTACAGGACGTGTTATTCACTAATGACGACAAAGATAGAGGTGATGGCAACAACGAAGTCGTGCACTCGGATGATGTGGACCATTTTATGCAGCATAGTGAGCGTCTTACCAATGCGACAACACCGTCAGCACGATGGAGACACGCTTCTTCCTTTTTGACAGATAAAAATGACTCCAGTCGAAAACTACTTTTTCTCTGCGGAGGAAGAATGGAAGACAGCCTTGCTTTGAATGATAGTTGGCTTTTCGATTCTGAAAAATTCAAGTGGCATGAAATTAATGTTGATGTCAAAGGTCGACATTCTCACACTGCATCCCATTGGGACGGTGAGGTCGTGATCTTTGGTGGCCTTGATGCGGAGTCGAGGGCTCTTAATGACATCACCATCATTGGCCTTAAGGGAAACGAGCTGACAAGCCGAAATTTAGTCTTTTCTCCCCCACTACCACCAAGGTATTCCCACACTGCGCATGTGGTAAATAGCAAGCTGGTCGTTATTGGAGGGGTAGACCCTGGAGATTGTTTACGCAGCGATATTCTCGTTGTTGATATGTTGCGGTTGTCATGGAGGGGATTTTCTTTTCCAGTAGAAACCTTTACCAAACCCTTCATGTTACACAATCATGTCAGTGTAGTCCGGGACAACGGCATCTTTGTGGTTATCGGAGGGGGAGGCAACTGCTTCTCGTTTGGAACACATTTTAATGATCAGCTGCTATATGTTAACTTGAGAAATGTTTTGATGGATAACTTTGATCACAGCTGA

Transcript

g9857.t1

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04072 all species →	LCM	Leucine carboxyl methyltransferase	Family	Interproscan
PF01344 all species →	Kelch_1	Kelch motif	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011043 all species →	Homologous_superfamily	Galactose oxidase/kelch, beta-propeller	Interproscan
IPR015915 all species →	Homologous_superfamily	Kelch-type beta propeller	Interproscan
IPR029063 all species →	Homologous_superfamily	S-adenosyl-L-methionine-dependent methyltransferase superfamily	Interproscan
IPR007213 all species →	Family	Methyltransferase Ppm1/Ppm2/Tcmp	Interproscan
IPR006652 all species →	Repeat	Kelch repeat type 1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46529 all species →	TRNA WYBUTOSINE-SYNTHESIZING PROTEIN 4	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0008175 all species →	Molecular Function	tRNA methyltransferase activity	Interproscan
GO:0030488 all species →	Biological Process	tRNA methylation	Interproscan
GO:0031591 all species →	Biological Process	wybutosine biosynthetic process	Interproscan
GO:0008168 all species →	Molecular Function	methyltransferase activity	Interproscan
GO:0032259 all species →	Biological Process	methylation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K15451	PPM2, LCMT2, TYW4; tRNA wybutosine-synthesizing protein 4	EC:2.1.1.290 EC:2.3.1.231	Transfer RNA biogenesis	ko03016	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.