Detailed information of g988.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: XP_012563506.1, unnamed protein product [Hydra vulgaris]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q9DBV3Probable ATP-dependent RNA helicase DHX34 OS=Mus musculus OX=10090 GN=Dhx34 PE=1 SV=2
Q14147Probable ATP-dependent RNA helicase DHX34 OS=Homo sapiens OX=9606 GN=DHX34 PE=1 SV=2
Q10752Pre-mRNA-splicing factor ATP-dependent RNA helicase-like protein cdc28 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=cdc28 PE=3 SV=2

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF07717OB_NTP_bindOligonucleotide/oligosaccharide-binding (OB)-foldDomainInterproscan
PF00270DEADDEAD/DEAH box helicaseDomainInterproscan
PF21010HA2_CHelicase associated domain (HA2), ratchet-likeDomainInterproscan
PF00271Helicase_CHelicase conserved C-terminal domainDomainInterproscan
PF04408HA2_NHelicase associated domain (HA2), winged-helixDomainInterproscan
PF00078RVT_1Reverse transcriptase (RNA-dependent DNA polymerase)DomainInterproscan
PF00413Peptidase_M10MatrixinDomainInterproscan
PF01103Omp85Omp85 superfamily domainDomainInterproscan
PF07244POTRASurface antigen variable number repeatDomainInterproscan
PF17921Integrase_H2C2Integrase zinc binding domainDomainInterproscan
PF00125HistoneCore histone H2A/H2B/H3/H4DomainInterproscan
PF21238Pus10_CPus10, C-terminalDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR027417Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan
IPR001650DomainHelicase, C-terminal domain-likeInterproscan
IPR007502DomainHelicase-associated domainInterproscan
IPR011709DomainDEAD-box helicase, OB foldInterproscan
IPR011545DomainDEAD/DEAH box helicase domainInterproscan
IPR014001DomainHelicase superfamily 1/2, ATP-binding domainInterproscan
IPR048333DomainHelicase associated domain (HA2), winged-helix domainInterproscan
IPR004888FamilyGlycoside hydrolase family 63Interproscan
IPR000477DomainReverse transcriptase domainInterproscan
IPR021190FamilyPeptidase M10AInterproscan
IPR024079Homologous_superfamilyMetallopeptidase, catalytic domain superfamilyInterproscan
IPR001818DomainPeptidase M10, metallopeptidaseInterproscan
IPR006026DomainPeptidase, metallopeptidaseInterproscan
IPR034746DomainPOTRA domainInterproscan
IPR023707FamilyOuter membrane protein assembly factor BamAInterproscan
IPR039910FamilySurface antigen D15-likeInterproscan
IPR000184DomainBacterial surface antigen (D15)Interproscan
IPR010827DomainPOTRA domain, BamA/TamA-likeInterproscan
IPR050951FamilyRetrovirus-related Pol polyproteinInterproscan
IPR012337Homologous_superfamilyRibonuclease H-like superfamilyInterproscan
IPR036397Homologous_superfamilyRibonuclease H superfamilyInterproscan
IPR041588DomainIntegrase zinc-binding domainInterproscan
IPR001584DomainIntegrase, catalytic coreInterproscan
IPR000164FamilyHistone H3/CENP-AInterproscan
IPR009072Homologous_superfamilyHistone-foldInterproscan
IPR007125DomainHistone H2A/H2B/H3Interproscan
IPR039894FamilytRNA pseudouridine synthase Pus10-likeInterproscan
IPR048741DomainPus10-like, C-terminalInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR18934ATP-DEPENDENT RNA HELICASEInterproscan
PTHR10412MANNOSYL-OLIGOSACCHARIDE GLUCOSIDASEInterproscan
PTHR19446REVERSE TRANSCRIPTASESInterproscan
PTHR10201MATRIX METALLOPROTEINASEInterproscan
PTHR12815SORTING AND ASSEMBLY MACHINERY SAMM50 PROTEIN FAMILY MEMBERInterproscan
PTHR37984PROTEIN CBG26694Interproscan
PTHR11426HISTONE H3Interproscan
PTHR21568UNCHARACTERIZEDInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0003676Molecular Functionnucleic acid bindingInterproscan
GO:0005524Molecular FunctionATP bindingInterproscan
GO:0000184Biological Processnuclear-transcribed mRNA catabolic process, nonsense-mediated decayInterproscan
GO:0003723Molecular FunctionRNA bindingInterproscan
GO:0004386Molecular Functionhelicase activityInterproscan
GO:0005622Cellular Componentintracellular anatomical structureInterproscan
GO:0004573Molecular FunctionGlc3Man9GlcNAc2 oligosaccharide glucosidase activityInterproscan
GO:0006487Biological Processprotein N-linked glycosylationInterproscan
GO:0009311Biological Processoligosaccharide metabolic processInterproscan
GO:0004222Molecular Functionmetalloendopeptidase activityInterproscan
GO:0006508Biological ProcessproteolysisInterproscan
GO:0008270Molecular Functionzinc ion bindingInterproscan
GO:0008237Molecular Functionmetallopeptidase activityInterproscan
GO:0031012Cellular Componentextracellular matrixInterproscan
GO:0030198Biological Processextracellular matrix organizationInterproscan
GO:0030574Biological Processcollagen catabolic processInterproscan
GO:0071709Biological Processmembrane assemblyInterproscan
GO:0019867Cellular Componentouter membraneInterproscan
GO:0015074Biological ProcessDNA integrationInterproscan
GO:0000786Cellular ComponentnucleosomeInterproscan
GO:0003677Molecular FunctionDNA bindingInterproscan
GO:0030527Molecular Functionstructural constituent of chromatinInterproscan
GO:0046982Molecular Functionprotein heterodimerization activityInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0009982Molecular Functionpseudouridine synthase activityInterproscan
GO:0031119Biological ProcesstRNA pseudouridine synthesisInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K07277SAM50, TOB55, bamA; outer membrane protein insertion porin family-Messenger RNA biogenesisko03019deepkoala
Exosomeko04147deepkoala
Transportersko02000deepkoala

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