Gene detail

Detailed information of g99.t1 in Calvadosia cruxmelitensis

Genomic Location: not available for this species
NR annotation: OGG99650.1, hypothetical protein A2557_09025 [Candidatus Lambdaproteobacteria bacterium RIFOXYD2_FULL_56_26]
Species Calvadosia cruxmelitensis · all data for this species · gene families

Sequence

Sequence data are not available for Calvadosia cruxmelitensis.
Nucleotide and protein sequences are provided for the species whose genome annotation is complete (see annotated genomes); for this species only the assembly is archived. The functional annotation below is likewise unavailable.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A2YL07	Glutamate--cysteine ligase B, chloroplastic OS=Oryza sativa subsp. indica OX=39946 GN=GSH1-2 PE=3 SV=2
Q6Z3A3	Glutamate--cysteine ligase B, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=GSH1-2 PE=3 SV=1
Q8GU95	Glutamate--cysteine ligase A, chloroplastic OS=Oryza sativa subsp. indica OX=39946 GN=GSH1-1 PE=2 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000011 (this species only)
Orthogroup (gene family)	OG0000198 (this species only)
Orthogroup (gene family)	OG0001419 (this species only)
Orthogroup (gene family)	OG0001857 (this species only)
Orthogroup (gene family)	OG0003210 (this species only)
Orthogroup (gene family)	OG0003925 (this species only)
Orthogroup (gene family)	OG0005350 (this species only)
Orthogroup (gene family)	OG0006755 (this species only)
Orthogroup (gene family)	OG0007681 (this species only)
Orthogroup (gene family)	OG0008608 (this species only)
Orthogroup (gene family)	OG0009383 (this species only)
Orthogroup (gene family)	OG0025643 (this species only)
Orthogroup (gene family)	OG0059493 (this species only)
Orthogroup (gene family)	OG0172208 (this species only)
Orthogroup (gene family)	OG0174396 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00078 all species →	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan
PF01150 all species →	GDA1_CD39	GDA1/CD39 (nucleoside phosphatase) family	Family	Interproscan
PF01715 all species →	IPPT	IPP transferase	Domain	Interproscan
PF04107 all species →	GCS2	Glutamate-cysteine ligase family 2(GCS2)	Family	Interproscan
PF03133 all species →	TTL	Tubulin-tyrosine ligase family	Family	Interproscan
PF06113 all species →	BRE	Brain and reproductive organ-expressed protein (BRE)	Family	Interproscan
PF13920 all species →	zf-C3HC4_3	Zinc finger, C3HC4 type (RING finger)	Domain	Interproscan
PF00536 all species →	SAM_1	SAM domain (Sterile alpha motif)	Domain	Interproscan
PF13476 all species →	AAA_23	AAA domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000477 all species →	Domain	Reverse transcriptase domain	Interproscan
IPR043502 all species →	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR000407 all species →	Family	Nucleoside phosphatase GDA1/CD39	Interproscan
IPR011050 all species →	Homologous_superfamily	Pectin lyase fold/virulence factor	Interproscan
IPR006336 all species →	Family	Glutamate--cysteine ligase, GCS2	Interproscan
IPR035434 all species →	Family	Glutamate--cysteine ligase, bacteria and plant	Interproscan
IPR018022 all species →	Family	IPP transferase	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR014746 all species →	Homologous_superfamily	Glutamine synthetase/guanido kinase, catalytic domain	Interproscan
IPR051077 all species →	Family	Calcium-dependent Lectin	Interproscan
IPR001227 all species →	Homologous_superfamily	Acyl transferase domain superfamily	Interproscan
IPR052760 all species →	Family	Mitochondrial malonyltransferase	Interproscan
IPR016035 all species →	Homologous_superfamily	Acyl transferase/acyl hydrolase/lysophospholipase	Interproscan
IPR004344 all species →	Family	Tubulin-tyrosine ligase/Tubulin polyglutamylase	Interproscan
IPR010358 all species →	Family	BRCA1-A complex subunit BRE	Interproscan
IPR013761 all species →	Homologous_superfamily	Sterile alpha motif/pointed domain superfamily	Interproscan
IPR051652 all species →	Family	MDM2/MDM4 and MUL1	Interproscan
IPR001841 all species →	Domain	Zinc finger, RING-type	Interproscan
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR001660 all species →	Domain	Sterile alpha motif domain	Interproscan
IPR038729 all species →	Domain	Rad50/SbcC-type AAA domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19446 all species →	REVERSE TRANSCRIPTASES	Interproscan
PTHR11782 all species →	ADENOSINE/GUANOSINE DIPHOSPHATASE	Interproscan
PTHR34378 all species →	GLUTAMATE--CYSTEINE LIGASE, CHLOROPLASTIC	Interproscan
PTHR24024 all species →	PULMONARY SURFACTANT-ASSOCIATED PROTEIN A	Interproscan
PTHR47170 all species →	MALONYL-COA ACP TRANSACYLASE, ACP-BINDING	Interproscan
PTHR12241 all species →	TUBULIN POLYGLUTAMYLASE	Interproscan
PTHR15189 all species →	BRISC AND BRCA1-A COMPLEX MEMBER 2	Interproscan
PTHR12183 all species →	MITOCHONDRIAL UBIQUITIN LIGASE ACTIVATOR OF NFKB 1	Interproscan
PTHR18867 all species →	RAD50	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016787 all species →	Molecular Function	hydrolase activity	Interproscan
GO:0004357 all species →	Molecular Function	glutamate-cysteine ligase activity	Interproscan
GO:0042398 all species →	Biological Process	modified amino acid biosynthetic process	Interproscan
GO:0006750 all species →	Biological Process	glutathione biosynthetic process	Interproscan
GO:0008033 all species →	Biological Process	tRNA processing	Interproscan
GO:0052381 all species →	Molecular Function	tRNA dimethylallyltransferase activity	Interproscan
GO:0003824 all species →	Molecular Function	catalytic activity	Interproscan
GO:0005615 all species →	Cellular Component	extracellular space	Interproscan
GO:0016740 all species →	Molecular Function	transferase activity	Interproscan
GO:0036211 all species →	Biological Process	protein modification process	Interproscan
GO:0000226 all species →	Biological Process	microtubule cytoskeleton organization	Interproscan
GO:0005929 all species →	Cellular Component	cilium	Interproscan
GO:0015631 all species →	Molecular Function	tubulin binding	Interproscan
GO:0018095 all species →	Biological Process	protein polyglutamylation	Interproscan
GO:0070740 all species →	Molecular Function	tubulin-glutamic acid ligase activity	Interproscan
GO:0070531 all species →	Cellular Component	BRCA1-A complex	Interproscan
GO:0070552 all species →	Cellular Component	BRISC complex	Interproscan
GO:0006302 all species →	Biological Process	double-strand break repair	Interproscan
GO:0004842 all species →	Molecular Function	ubiquitin-protein transferase activity	Interproscan
GO:0016567 all species →	Biological Process	protein ubiquitination	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0000722 all species →	Biological Process	telomere maintenance via recombination	Interproscan
GO:0000794 all species →	Cellular Component	condensed nuclear chromosome	Interproscan
GO:0003691 all species →	Molecular Function	double-stranded telomeric DNA binding	Interproscan
GO:0007004 all species →	Biological Process	telomere maintenance via telomerase	Interproscan
GO:0030870 all species →	Cellular Component	Mre11 complex	Interproscan
GO:0032508 all species →	Biological Process	DNA duplex unwinding	Interproscan
GO:0043047 all species →	Molecular Function	single-stranded telomeric DNA binding	Interproscan
GO:0051880 all species →	Molecular Function	G-quadruplex DNA binding	Interproscan
GO:0070192 all species →	Biological Process	chromosome organization involved in meiotic cell cycle	Interproscan
GO:0090305 all species →	Biological Process	obsolete nucleic acid phosphodiester bond hydrolysis	Interproscan
GO:0016887 all species →	Molecular Function	ATP hydrolysis activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01511	ENTPD5_6; ectonucleoside triphosphate diphosphohydrolase 5/6	EC:3.6.1.6	Pyrimidine metabolism	ko00240	deepkoala
K16582	TTLL6_13; tubulin polyglutamylase TTLL6/13	EC:6.3.2.61	Cytoskeleton proteins	ko04812	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.