Gene detail

Detailed information of g99.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: OGG99650.1, hypothetical protein A2557_09025 [Candidatus Lambdaproteobacteria bacterium RIFOXYD2_FULL_56_26]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

Protein

Uniprot

Uniprot term	Description
A2YL07	Glutamate--cysteine ligase B, chloroplastic OS=Oryza sativa subsp. indica OX=39946 GN=GSH1-2 PE=3 SV=2
Q6Z3A3	Glutamate--cysteine ligase B, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=GSH1-2 PE=3 SV=1
Q8GU95	Glutamate--cysteine ligase A, chloroplastic OS=Oryza sativa subsp. indica OX=39946 GN=GSH1-1 PE=2 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00078	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan
PF01150	GDA1_CD39	GDA1/CD39 (nucleoside phosphatase) family	Family	Interproscan
PF01715	IPPT	IPP transferase	Domain	Interproscan
PF04107	GCS2	Glutamate-cysteine ligase family 2(GCS2)	Family	Interproscan
PF03133	TTL	Tubulin-tyrosine ligase family	Family	Interproscan
PF06113	BRE	Brain and reproductive organ-expressed protein (BRE)	Family	Interproscan
PF13920	zf-C3HC4_3	Zinc finger, C3HC4 type (RING finger)	Domain	Interproscan
PF00536	SAM_1	SAM domain (Sterile alpha motif)	Domain	Interproscan
PF13476	AAA_23	AAA domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000477	Domain	Reverse transcriptase domain	Interproscan
IPR043502	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR000407	Family	Nucleoside phosphatase GDA1/CD39	Interproscan
IPR011050	Homologous_superfamily	Pectin lyase fold/virulence factor	Interproscan
IPR006336	Family	Glutamate--cysteine ligase, GCS2	Interproscan
IPR035434	Family	Glutamate--cysteine ligase, bacteria and plant	Interproscan
IPR018022	Family	IPP transferase	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR014746	Homologous_superfamily	Glutamine synthetase/guanido kinase, catalytic domain	Interproscan
IPR051077	Family	Calcium-dependent Lectin	Interproscan
IPR001227	Homologous_superfamily	Acyl transferase domain superfamily	Interproscan
IPR052760	Family	Mitochondrial malonyltransferase	Interproscan
IPR016035	Homologous_superfamily	Acyl transferase/acyl hydrolase/lysophospholipase	Interproscan
IPR004344	Family	Tubulin-tyrosine ligase/Tubulin polyglutamylase	Interproscan
IPR010358	Family	BRCA1-A complex subunit BRE	Interproscan
IPR013761	Homologous_superfamily	Sterile alpha motif/pointed domain superfamily	Interproscan
IPR051652	Family	MDM2/MDM4 and MUL1	Interproscan
IPR001841	Domain	Zinc finger, RING-type	Interproscan
IPR013083	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR001660	Domain	Sterile alpha motif domain	Interproscan
IPR038729	Domain	Rad50/SbcC-type AAA domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19446	REVERSE TRANSCRIPTASES	Interproscan
PTHR11782	ADENOSINE/GUANOSINE DIPHOSPHATASE	Interproscan
PTHR34378	GLUTAMATE--CYSTEINE LIGASE, CHLOROPLASTIC	Interproscan
PTHR24024	PULMONARY SURFACTANT-ASSOCIATED PROTEIN A	Interproscan
PTHR47170	MALONYL-COA ACP TRANSACYLASE, ACP-BINDING	Interproscan
PTHR12241	TUBULIN POLYGLUTAMYLASE	Interproscan
PTHR15189	BRISC AND BRCA1-A COMPLEX MEMBER 2	Interproscan
PTHR12183	MITOCHONDRIAL UBIQUITIN LIGASE ACTIVATOR OF NFKB 1	Interproscan
PTHR18867	RAD50	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0016787	Molecular Function	hydrolase activity	Interproscan
GO:0004357	Molecular Function	glutamate-cysteine ligase activity	Interproscan
GO:0042398	Biological Process	modified amino acid biosynthetic process	Interproscan
GO:0006750	Biological Process	glutathione biosynthetic process	Interproscan
GO:0008033	Biological Process	tRNA processing	Interproscan
GO:0052381	Molecular Function	tRNA dimethylallyltransferase activity	Interproscan
GO:0003824	Molecular Function	catalytic activity	Interproscan
GO:0005615	Cellular Component	extracellular space	Interproscan
GO:0016740	Molecular Function	transferase activity	Interproscan
GO:0036211	Biological Process	protein modification process	Interproscan
GO:0000226	Biological Process	microtubule cytoskeleton organization	Interproscan
GO:0005929	Cellular Component	cilium	Interproscan
GO:0015631	Molecular Function	tubulin binding	Interproscan
GO:0018095	Biological Process	protein polyglutamylation	Interproscan
GO:0070740	Molecular Function	tubulin-glutamic acid ligase activity	Interproscan
GO:0070531	Cellular Component	BRCA1-A complex	Interproscan
GO:0070552	Cellular Component	BRISC complex	Interproscan
GO:0006302	Biological Process	double-strand break repair	Interproscan
GO:0004842	Molecular Function	ubiquitin-protein transferase activity	Interproscan
GO:0016567	Biological Process	protein ubiquitination	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0000722	Biological Process	telomere maintenance via recombination	Interproscan
GO:0000794	Cellular Component	condensed nuclear chromosome	Interproscan
GO:0003691	Molecular Function	double-stranded telomeric DNA binding	Interproscan
GO:0007004	Biological Process	telomere maintenance via telomerase	Interproscan
GO:0030870	Cellular Component	Mre11 complex	Interproscan
GO:0032508	Biological Process	DNA duplex unwinding	Interproscan
GO:0043047	Molecular Function	single-stranded telomeric DNA binding	Interproscan
GO:0051880	Molecular Function	G-quadruplex DNA binding	Interproscan
GO:0070192	Biological Process	chromosome organization involved in meiotic cell cycle	Interproscan
GO:0090305	Biological Process	obsolete nucleic acid phosphodiester bond hydrolysis	Interproscan
GO:0016887	Molecular Function	ATP hydrolysis activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K01511	ENTPD5_6; ectonucleoside triphosphate diphosphohydrolase 5/6	EC:3.6.1.6	Cytoskeleton proteins	ko04812	deepkoala
K01511		EC:3.6.1.6	Pyrimidine metabolism	ko00240	deepkoala