Gene detail

Detailed information of g990.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: XP_020892272.1, transmembrane protein 180 [Exaiptasia diaphana]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

Protein

Uniprot

Gene family

Uniprot term	Description
Q5ZKJ5	Transmembrane protein 180 OS=Gallus gallus OX=9031 GN=MFSD13A PE=2 SV=1
Q58CT4	Transmembrane protein 180 OS=Bos taurus OX=9913 GN=MFSD13A PE=2 SV=1
Q14CX5	Transmembrane protein 180 OS=Homo sapiens OX=9606 GN=MFSD13A PE=1 SV=1

Gene family	Subfamily
Ubiquitin Family	UBD\|Other\|SH3

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00435	Spectrin	Spectrin repeat	Domain	Interproscan
PF00018	SH3_1	SH3 domain	Domain	Interproscan
PF00078	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan
PF04959	ARS2	Arsenite-resistance protein 2	Family	Interproscan
PF00106	adh_short	short chain dehydrogenase	Domain	Interproscan
PF02214	BTB_2	BTB/POZ domain	Domain	Interproscan
PF00520	Ion_trans	Ion transport protein	Family	Interproscan
PF13347	MFS_2	MFS/sugar transport protein	Family	Interproscan
PF13499	EF-hand_7	EF-hand domain pair	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR009030	Homologous_superfamily	Growth factor receptor cysteine-rich domain superfamily	Interproscan
IPR018159	Repeat	Spectrin/alpha-actinin	Interproscan
IPR002017	Repeat	Spectrin repeat	Interproscan
IPR001452	Domain	SH3 domain	Interproscan
IPR039801	Family	Epidermal growth factor receptor kinase substrate 8-like	Interproscan
IPR036028	Homologous_superfamily	SH3-like domain superfamily	Interproscan
IPR000477	Domain	Reverse transcriptase domain	Interproscan
IPR043502	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR039727	Family	SERRATE/Ars2	Interproscan
IPR002347	Family	Short-chain dehydrogenase/reductase SDR	Interproscan
IPR007042	Domain	SERRATE/Ars2 , C-terminal	Interproscan
IPR036291	Homologous_superfamily	NAD(P)-binding domain superfamily	Interproscan
IPR011050	Homologous_superfamily	Pectin lyase fold/virulence factor	Interproscan
IPR003968	Family	Potassium channel, voltage dependent, Kv	Interproscan
IPR011333	Homologous_superfamily	SKP1/BTB/POZ domain superfamily	Interproscan
IPR003974	Family	Potassium channel, voltage dependent, Kv3	Interproscan
IPR003131	Domain	Potassium channel tetramerisation-type BTB domain	Interproscan
IPR027359	Homologous_superfamily	Voltage-dependent channel domain superfamily	Interproscan
IPR005821	Domain	Ion transport domain	Interproscan
IPR000210	Domain	BTB/POZ domain	Interproscan
IPR040035	Family	Transmembrane protein 180	Interproscan
IPR036259	Homologous_superfamily	MFS transporter superfamily	Interproscan
IPR002048	Domain	EF-hand domain	Interproscan
IPR018247	Binding_site	EF-Hand 1, calcium-binding site	Interproscan
IPR011992	Homologous_superfamily	EF-hand domain pair	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11915	SPECTRIN/FILAMIN RELATED CYTOSKELETAL PROTEIN	Interproscan
PTHR12287	EPIDERMAL GROWTH FACTOR RECEPTOR KINASE SUBSTRATE EPS8-RELATED PROTEIN	Interproscan
PTHR47027	REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN	Interproscan
PTHR13165	ARSENITE-RESISTANCE PROTEIN 2	Interproscan
PTHR11537	VOLTAGE-GATED POTASSIUM CHANNEL	Interproscan
PTHR28658	TRANSMEMBRANE PROTEIN 180	Interproscan
PTHR10891	EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005886	Cellular Component	plasma membrane	Interproscan
GO:0030036	Biological Process	actin cytoskeleton organization	Interproscan
GO:0030054	Cellular Component	cell junction	Interproscan
GO:0030864	Cellular Component	cortical actin cytoskeleton	Interproscan
GO:0042995	Cellular Component	cell projection	Interproscan
GO:0051015	Molecular Function	actin filament binding	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0003779	Molecular Function	actin binding	Interproscan
GO:0007266	Biological Process	Rho protein signal transduction	Interproscan
GO:0035023	Biological Process	regulation of Rho protein signal transduction	Interproscan
GO:0006397	Biological Process	mRNA processing	Interproscan
GO:0016604	Cellular Component	nuclear body	Interproscan
GO:0031053	Biological Process	primary miRNA processing	Interproscan
GO:0005249	Molecular Function	voltage-gated potassium channel activity	Interproscan
GO:0006813	Biological Process	potassium ion transport	Interproscan
GO:0008076	Cellular Component	voltage-gated potassium channel complex	Interproscan
GO:0051260	Biological Process	protein homooligomerization	Interproscan
GO:0005216	Molecular Function	monoatomic ion channel activity	Interproscan
GO:0006811	Biological Process	monoatomic ion transport	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0055085	Biological Process	transmembrane transport	Interproscan
GO:0005251	Molecular Function	delayed rectifier potassium channel activity	Interproscan
GO:0016021	Cellular Component	membrane	Interproscan
GO:0071805	Biological Process	potassium ion transmembrane transport	Interproscan
GO:0005509	Molecular Function	calcium ion binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K04887	KCNC1, KV3.1; potassium voltage-gated channel Shaw-related subfamily C member 1	-	Ion channels	ko04040	deepkoala