Detailed information of g993.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: CAH3040744.1, unnamed protein product [Porites lobata]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q2T9S3DNA-directed RNA polymerase III subunit RPC6 OS=Bos taurus OX=9913 GN=POLR3F PE=2 SV=1
Q9H1D9DNA-directed RNA polymerase III subunit RPC6 OS=Homo sapiens OX=9606 GN=POLR3F PE=1 SV=1
Q921X6DNA-directed RNA polymerase III subunit RPC6 OS=Mus musculus OX=10090 GN=Polr3f PE=1 SV=1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00055Laminin_NLaminin N-terminal (Domain VI)DomainInterproscan
PF05158RNA_pol_Rpc34RNA polymerase Rpc34 subunitFamilyInterproscan
PF21033RMD1-3Regulator of microtubule dynamics protein 1-3RepeatInterproscan
PF03128CXCXCCXCXC repeatRepeatInterproscan
PF13895Ig_2Immunoglobulin domainDomainInterproscan
PF00089TrypsinTrypsinDomainInterproscan
PF09380FERM_CFERM C-terminal PH-like domainDomainInterproscan
PF00373FERM_MFERM central domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR008211DomainLaminin, N-terminalInterproscan
IPR050440FamilyLaminin/Netrin Extracellular MatrixInterproscan
IPR036397Homologous_superfamilyRibonuclease H superfamilyInterproscan
IPR012337Homologous_superfamilyRibonuclease H-like superfamilyInterproscan
IPR007832FamilyRNA polymerase Rpc34Interproscan
IPR036388Homologous_superfamilyWinged helix-like DNA-binding domain superfamilyInterproscan
IPR016049FamilyRNA polymerase Rpc34-likeInterproscan
IPR036390Homologous_superfamilyWinged helix DNA-binding domain superfamilyInterproscan
IPR024857FamilyCappuccinoInterproscan
IPR019734RepeatTetratricopeptide repeatInterproscan
IPR049039RepeatRegulator of microtubule dynamics protein 1-3, alpha helical repeatsInterproscan
IPR011990Homologous_superfamilyTetratricopeptide-like helical domain superfamilyInterproscan
IPR029034Homologous_superfamilyCystine-knot cytokineInterproscan
IPR004153RepeatCXCXC repeatInterproscan
IPR040247FamilyProtein of unknown function DUF5524Interproscan
IPR003599DomainImmunoglobulin subtypeInterproscan
IPR013783Homologous_superfamilyImmunoglobulin-like foldInterproscan
IPR007110DomainImmunoglobulin-like domainInterproscan
IPR003598DomainImmunoglobulin subtype 2Interproscan
IPR051275FamilyCellular adhesion and signaling domain-containing proteinInterproscan
IPR036179Homologous_superfamilyImmunoglobulin-like domain superfamilyInterproscan
IPR001254DomainSerine proteases, trypsin domainInterproscan
IPR018114Active_siteSerine proteases, trypsin family, histidine active siteInterproscan
IPR001314FamilyPeptidase S1A, chymotrypsin familyInterproscan
IPR050127FamilySerine Proteases (Peptidase S1 Family)Interproscan
IPR009003Homologous_superfamilyPeptidase S1, PA clanInterproscan
IPR043504Homologous_superfamilyPeptidase S1, PA clan, chymotrypsin-like foldInterproscan
IPR011993Homologous_superfamilyPH-like domain superfamilyInterproscan
IPR018980DomainFERM, C-terminal PH-like domainInterproscan
IPR035963Homologous_superfamilyFERM superfamily, second domainInterproscan
IPR014352Homologous_superfamilyFERM/acyl-CoA-binding protein superfamilyInterproscan
IPR019748DomainFERM central domainInterproscan
IPR000299DomainFERM domainInterproscan
IPR052074FamilyNon-receptor Tyrosine-protein PhosphatasesInterproscan
IPR019749DomainBand 4.1 domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR10574NETRIN/LAMININ-RELATEDInterproscan
PTHR42648TRANSPOSASE, PUTATIVE-RELATEDInterproscan
PTHR12780RNA POLYMERASE III DNA DIRECTED , 39KD SUBUNIT-RELATEDInterproscan
PTHR16230CAPPUCCINOInterproscan
PTHR16056REGULATOR OF MICROTUBULE DYNAMICS PROTEINInterproscan
PTHR11633PLATELET-DERIVED GROWTH FACTORInterproscan
PTHR31097SI:DKEY-276J7.1Interproscan
PTHR11640NEPHRINInterproscan
PTHR24264TRYPSIN-RELATEDInterproscan
PTHR46900TYROSINE-PROTEIN PHOSPHATASE NON-RECEPTOR TYPE 13Interproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0005604Cellular Componentbasement membraneInterproscan
GO:0009887Biological Processanimal organ morphogenesisInterproscan
GO:0009888Biological Processtissue developmentInterproscan
GO:0003676Molecular Functionnucleic acid bindingInterproscan
GO:0005666Cellular ComponentRNA polymerase III complexInterproscan
GO:0006383Biological Processtranscription by RNA polymerase IIIInterproscan
GO:0031083Cellular ComponentBLOC-1 complexInterproscan
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0005737Cellular ComponentcytoplasmInterproscan
GO:0005739Cellular ComponentmitochondrionInterproscan
GO:0005876Cellular Componentspindle microtubuleInterproscan
GO:0008017Molecular Functionmicrotubule bindingInterproscan
GO:0097431Cellular Componentmitotic spindle poleInterproscan
GO:0005615Cellular Componentextracellular spaceInterproscan
GO:0008284Biological Processpositive regulation of cell population proliferationInterproscan
GO:0031954Biological Processpositive regulation of protein autophosphorylationInterproscan
GO:0070851Molecular Functiongrowth factor receptor bindingInterproscan
GO:0005887Cellular Componentplasma membraneInterproscan
GO:0005911Cellular Componentcell-cell junctionInterproscan
GO:0050839Molecular Functioncell adhesion molecule bindingInterproscan
GO:0098609Biological Processcell-cell adhesionInterproscan
GO:0004252Molecular Functionserine-type endopeptidase activityInterproscan
GO:0006508Biological ProcessproteolysisInterproscan
GO:0005856Cellular ComponentcytoskeletonInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K08366BLOC1S4, CNO; biogenesis of lysosome-related organelles complex 1 subunit 4-Transcription machineryko03021deepkoala
Membrane traffickingko04131deepkoala

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