Detailed information of g995.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: CAH3042880.1, unnamed protein product [Porites lobata]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q80TY5Intermembrane lipid transfer protein VPS13B OS=Mus musculus OX=10090 GN=Vps13b PE=1 SV=3
Q7Z7G8Intermembrane lipid transfer protein VPS13B OS=Homo sapiens OX=9606 GN=VPS13B PE=1 SV=2
Q07878Intermembrane lipid transfer protein VPS13 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=VPS13 PE=1 SV=1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF01412ArfGapPutative GTPase activating protein for ArfDomainInterproscan
PF00929RNase_TExonucleaseFamilyInterproscan
PF07690MFS_1Major Facilitator SuperfamilyFamilyInterproscan
PF08069Ribosomal_S13_NRibosomal S13/S15 N-terminal domainDomainInterproscan
PF00312Ribosomal_S15Ribosomal protein S15DomainInterproscan
PF04695Pex14_NPex14 N-terminal domainDomainInterproscan
PF12624Chorein_NVPS13-like, N-terminalDomainInterproscan
PF16908VPS13_ext_choreinVacuolar sorting-associated protein 13, extended-choreinRepeatInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR051718FamilyADP Ribosylation Factor GTPase-ActivatingInterproscan
IPR038508Homologous_superfamilyArfGAP domain superfamilyInterproscan
IPR001164DomainArf GTPase activating proteinInterproscan
IPR037278Homologous_superfamilyARFGAP/RecO-like zinc fingerInterproscan
IPR044732DomainSMAP1-like, ArfGAP domainInterproscan
IPR037431DomainRNA exonuclease 4, DEDDh 3'-5' exonuclease domainInterproscan
IPR047021FamilyRNA exonuclease REXO1/REXO3/REXO4-likeInterproscan
IPR013520DomainExonuclease, RNase T/DNA polymerase IIIInterproscan
IPR012337Homologous_superfamilyRibonuclease H-like superfamilyInterproscan
IPR036397Homologous_superfamilyRibonuclease H superfamilyInterproscan
IPR019734RepeatTetratricopeptide repeatInterproscan
IPR011990Homologous_superfamilyTetratricopeptide-like helical domain superfamilyInterproscan
IPR046357Homologous_superfamilyPeptidyl-prolyl cis-trans isomerase domain superfamilyInterproscan
IPR039663FamilyAIP/AIPL1/TTC9Interproscan
IPR020846DomainMajor facilitator superfamily domainInterproscan
IPR051068FamilyMajor Facilitator Superfamily Domain-Containing ProteinInterproscan
IPR011701FamilyMajor facilitator superfamilyInterproscan
IPR036259Homologous_superfamilyMFS transporter superfamilyInterproscan
IPR012606DomainSmall ribosomal subunit protein uS15, N-terminalInterproscan
IPR000589FamilySmall ribosomal subunit protein uS15Interproscan
IPR009068Homologous_superfamilyuS15/NS1, RNA-binding domain superfamilyInterproscan
IPR023029FamilySmall ribosomal subunit protein uS15, archaea/eukaryotesInterproscan
IPR039756FamilyType II phosphatidylinositol 4-kinase Lsb6/PI4K2Interproscan
IPR006785DomainPeroxisome membrane anchor protein Pex14p, N-terminalInterproscan
IPR036388Homologous_superfamilyWinged helix-like DNA-binding domain superfamilyInterproscan
IPR025655FamilyPeroxisomal membrane protein 14Interproscan
IPR026854DomainVacuolar protein sorting-associated protein 13-like, N-terminal domainInterproscan
IPR031646DomainVacuolar protein sorting-associated protein 13, extended choreinInterproscan
IPR039782FamilyIntermembrane lipid transfer protein VPS13BInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR45705FI20236P1Interproscan
PTHR12801RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATEDInterproscan
PTHR11242ARYL HYDROCARBON RECEPTOR INTERACTING PROTEIN RELATEDInterproscan
PTHR23510INNER MEMBRANE TRANSPORT PROTEIN YAJRInterproscan
PTHR11885RIBOSOMAL PROTEIN S15P/S13EInterproscan
PTHR12865PHOSPHATIDYLINOSITOL 4-KINASE TYPE-IIInterproscan
PTHR23058PEROXISOMAL MEMBRANE PROTEIN PEX14Interproscan
PTHR12517VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 13BInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0005096Molecular FunctionGTPase activator activityInterproscan
GO:0005737Cellular ComponentcytoplasmInterproscan
GO:0046872Molecular Functionmetal ion bindingInterproscan
GO:0006364Biological ProcessrRNA processingInterproscan
GO:0008408Molecular Function3'-5' exonuclease activityInterproscan
GO:0004527Molecular Functionexonuclease activityInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0003676Molecular Functionnucleic acid bindingInterproscan
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0003755Molecular Functionpeptidyl-prolyl cis-trans isomerase activityInterproscan
GO:0022857Molecular Functiontransmembrane transporter activityInterproscan
GO:0055085Biological Processtransmembrane transportInterproscan
GO:0003735Molecular Functionstructural constituent of ribosomeInterproscan
GO:0005840Cellular ComponentribosomeInterproscan
GO:0006412Biological ProcesstranslationInterproscan
GO:0005730Cellular ComponentnucleolusInterproscan
GO:0022627Cellular Componentcytosolic small ribosomal subunitInterproscan
GO:0070181Molecular Functionsmall ribosomal subunit rRNA bindingInterproscan
GO:0004430Molecular Function1-phosphatidylinositol 4-kinase activityInterproscan
GO:0005765Cellular Componentlysosomal membraneInterproscan
GO:0005768Cellular ComponentendosomeInterproscan
GO:0005802Cellular Componenttrans-Golgi networkInterproscan
GO:0005886Cellular Componentplasma membraneInterproscan
GO:0007030Biological ProcessGolgi organizationInterproscan
GO:0007032Biological Processendosome organizationInterproscan
GO:0046854Biological Processphosphatidylinositol phosphate biosynthetic processInterproscan
GO:0005102Molecular Functionsignaling receptor bindingInterproscan
GO:0005778Cellular Componentperoxisomal membraneInterproscan
GO:0016560Biological Processprotein import into peroxisome matrix, dockingInterproscan
GO:1990429Cellular Componentperoxisomal importomer complexInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K02953RP-S13e, RPS13; small subunit ribosomal protein S13e-Ribosome biogenesisko03009deepkoala
Membrane traffickingko04131deepkoala
Mitochondrial biogenesisko03029deepkoala
Ribosomeko03011deepkoala

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