Gene detail

Detailed information of g9960.t1 in Montipora capitata

Genomic Location: Sc0000270:259993...278423
NR annotation: XP_029193981.2, ephrin type-B receptor 1-B-like isoform X2 [Acropora millepora]
Species abbreviation MCAPI · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

g9960.t1

atgtcgtggaaagcgtggattttcgttgttacagtgggttggtctttctttcatttttcaaccggagaaacagcaatcctattgcagagacccaaacctggtcaaaccggacctggaagctggttttggaaagcagagaaagaaagtggtgacacagaggcttctgggtggctgccccctacattggagggatcaacatattctgtctgtgatatcgcagctaaacaaccaagcaattggttgcagagcaatgccttttatccaaacaaactaaaacatattgacatcactatcaactacacaatatcattgcggtgtgcatctcttgaaaatttacaaaattgcaaggaacagtttgatgtgtatgaatatcaagttattgaggaatccaatggctctgattttgatccaagaagtggaaaatacagtaaaatgaaaacattgtcattacctggaaatatctcaaacatatctaccattccttgggtagttgccaaattatcactttctatcaaggaaggaacgtcaaaggtattccttgctattcatgaccaaggcgcttgcattgcattgaattcatttgtggtaacatacagagtctgcccaggaaaggtcttacctggtagtctattgcttgtgccacaaacagtagctccaacaaatgaatctgcaattgtgaaagtttctggaaaatgtgtagctaattcagatgcaacatcacaagagttggatgccttttgtggaacaactggagattggatccttccagacagcacagtgaccaaagaagtatgtctttgtaaccctggatgggagagctcggctgctagatgtcaagaatgtccacctggttatttcaaagcgaagcgtggaaataccaaatgtacaaaatgcccaattaacagcgtttcaaactcagaccggaaatactgcaaatgcgtgcagggattcttccgcgctctgtgggagaacatcgcggaaaattgcacagctcttccctcaagaccaagacacttacgaatggtcgccaagaaccaaacagcagtgtcactatcctggtctcattctcatcttctcgggggacgaagagaattgtattacgagatagaatgtaagattgtctgcccaaaggaaaagaagagctgcagtcagaactgtggttcccaagtgcgttttctaccacgacaaagaaatttatcagaaaccaaagcaaccataaccaacctgtttcctcaaacaacgtaccggttcagggtttatgcgaaaaatggagtcagtcgcgtagcgaaaaaagagggtgtctcttcaaactttgcacgtgtagacgtcaccacacttgaatcggttccagggcagcccgaagtgagtgtgaaaaggatcgacagcactactgtaagagtgtcctggactctcgagaatggaaatgaaggcatcctttattccctagtgacgtactacccggttaatgataaatccgagagacttacaaaaaacacaaccgaatctgccatcataattgaagggcttcaacctgatgttgagtatcaattcctggtagttgcgaagaacagcatgggatatggaccagttagcgaggaggccaagattcaaggaagtggaatcgaggaaaaatttgaagacagcacaaagtcgtggttcctgataagcgctattgccggaggcactttattcattttcgttattatcgcctttgttgtggttattcgtgcaaagcgaagaaattcaaaccggaaaagggcaaacacgtttgaagcagcaacggagctattccccgctcacagcctatcacagtacgtggatccaagtatctatgacgacccgatggaagctgtcaaaacttttgctgccgagattgacaaaaatcaaataaaattagaaagcgccgttggtggaggggagtttgccgaagtgttcaagggattttacgatggatcaagggttgcagttaagactcttaagcaaggttccagtcaaaagacaagagacgattttatctcggaagcgtccatcatgggacaatttaaacatgctaatgttatccaactgataggggttgtgacaatcagccgaccaatgatgatcgtaacagagttcatggaaggaggttctcttgatattttcttaaaggaacatcaaggcaaactcacaacccttcagcttattggtatgatcaggggtgtggcatctggaatggtgtatctttcagccattaattttatccatagggaccttgcagctcgcaatatcttggtgggcgaaaatatgatttgcaaactatcggactttggactctcaagggagttagaggatgatccagattcagagtatcaaacacagggaggcaaaattccaattcgctggacggctccagaagcaatacggtataggaaattcagctcatccagcgatgtatggagttttgggatttttgtgtgggagacaatggcgtatggcgaaaggccatactgggattggagtaactttgaggtgatggacagagtggaagtaggatacaggctccctgcccccgtgaattgtcccaaaattgtccatggcgtgatgatggactgttggaatcaggacaggacgcaaagaccgagatttgaagaaattttgaaacgaatagatgatctcattcgcactccagagttgctcaatgatgatctagtttgttatacaagtgctgtgtcagcggatttcaccaaattaaacaccatctgtgagtggttaaacagtttacacatgggacagtacacagctaacttcaaaactgcgggctacaaagacttgcctcaagtgacttgcctcaaagacagtgatttaaaagaaattggggtatctttaatcggtcacaggaataagatctacaagagtataaaatcgatgagaaaacattttgataacatgcctgaagctgtatga

Transcript

g9960.t1

ATGTCGTGGAAAGCGTGGATTTTCGTTGTTACAGTGGGTTggtctttctttcatttttcaaccGGAGAAACAGCAATCCTATTGCAGAGACCCAAACCTGGTCAAACCGGACCTGGAAGCTGGTTTTGGAAAGCAGAGAAAGAAAGTGGTGACACAGAGGCTTCTGGGtGGCTGCCCCCTACATTGGAGGGATCAACATATTCTGTCTGTGATATCGCAGCTAAACAACCAAGCAATTGGTTGCAGAGCAATGCCTTTTATCCaaacaaactaaaacatatTGACATCACTATCAACTACACAATATCATTGCGGTGTGCATCTCttgaaaatttacaaaattgcAAGGAACAGTTTgatgtgtatgaatatcaagtTATTGAGGAATCCAATGGCTCTGATTTTGATCCAAGAAGTGGAAAATACAGTAAAATGAAAACATTGTCATTACCTGGAAATATCTCAAACATATCTACCATTCCTTGGGTAGTTGCCAAATTATCACTTTCTATCAAGGAAGGAACGTCAAAGGTATTCCTTGCTATTCATGACCAAGGCGCTTGCATTGCATTGAATTCATTTGTGGTAACATACAGAGTCTGCCCAGGAAAGGTCTTACCTGGTAGTCTATTGCTTGTGCCACAAACAGTAGCTCCAACAAATGAATCTGCAATTGTGAAAGTTTCTGGAAAATGTGTAGCTAATTCAGATGCAACATCACAAGAGTTGGATGCCTTTTGTGGAACAACTGGAGATTGGATCCTTCCAGACAGCACAGTGACCAAAGAAGTATGTCTTTGTAACCCTGGATGGGAGAGCTCGGCTGCTAGATGTCAAGAATGTCCACCTGGTTATTTCAAAGCGAAGCGTGGAAATACCAAATGTACAAAATGCCCAATTAACAGCGTTTCAAACTCAGACCGGAAATACTGCAAATGCGTGCAGGGATTCTTCCGCGCTCTGTGGGAGAACATCGCGGAAAATTGCACAGCTCTTCCCTCAAGACCAAGACACTTACGAATGGTCGCCAAGAACCAAACAGCAGTGTCACTATCCTGGTCTCATTCTCATCTTCTCGGGGGACGAAGAGAATTGTATTACGAGATAGAATGTAAGATTGTCTGCCCAAAGGAAAAGAAGAGCTGCAGTCAGAACTGTGGTTCCCAAGTGCGTTTTCTACCACGACAAAGAAATTTATCAGAAACCAAAGCAACCATAACCAACCTGTTTCCTCAAACAACGTACCGGTTCAGGGTTTATGCGAAAAATGGAGTCAGTCGCGTAGCGAAAAAAGAGGGTGTCTCTTCAAACTTTGCACGTGTAGACGTCACCACACTTGAATCGGTTCCAGGGCAGCCCGAAGTGAGTGTGAAAAGGATCGACAGCACTACTGTAAGAGTGTCCTGGACTCTCGAGAATGGAAATGAAGGCATCCTTTATTCCCTAGTGACGTACTACCCGGTTAATGATAAATCCGAGAGACTTACAAAAAACACAACCGAATCTGCCATCATAATTGAAGGGCTTCAACCTGATGTTGAGTATCAATTCCTGGTAGTTGCGAAGAACAGCATGGGATATGGACCAGTTAGCGAGGAGGCCAAGATTCAAGGAAGTGGAATCGAGGAAAAATTTGAAGACAGCACAAAGTCGTGGTTCCTGATAAGCGCTATTGCCGGAGGCACTTTATTCATTTTCGTTATTATCGCCTTTGTTGTGGTTATTCGTGCAAAGCGAAGAAATTCAAACCGGAAAAGGGCAAACACGTTTGAAGCAGCAACGGAGCTATTCCCCGCTCACAGCCTATCACAGTACGTGGATCCAAGTATCTATGACGACCCGATGGAAGCTGTCAAAACTTTTGCTGCCGAGATTgacaaaaatcaaataaaattagAAAGCGCCGTTGGTGGAGGGGAGTTTGCCGAAGTGTTCAAGGGATTTTACGATGGATCAAGGGTTGCAGTTAAGACTCTTAAGCAAGGTTCCAGTCAAAAGACAAGAGACGATTTTATCTCGGAAGCGTCCATCATGGGACAATTTAAACATGCTAATGTTATCCAACTGATAGGGGTTGTGACAATCAGCCGACCAATGATGATCGTAACAGAGTTCATGGAAGGAGGTTCTCTTGATATTTTCTTAAAGGAACATCAAGGCAAACTCACAACCCTTCAGCTTATTGGTATGATCAGGGGTGTGGCATCTGGAATGGTGTATCTTTCAGCCATTAATTTTATCCATAGGGACCTTGCAGCTCGCAATATCTTGGTGGGCGAAAATATGATTTGCAAACTATCGGACTTTGGACTCTCAAGGGAGTTAGAGGATGATCCAGATTCAGAGTATCAAACACAGGGAGGCAAAATTCCAATTCGCTGGACGGCTCCAGAAGCAATACGGTATAGGAAATTCAGCTCATCCAGCGATGTATGGAGTTTTGGGATTTTTGTGTGGGAGACAATGGCGTATGGCGAAAGGCCATACTGGGATTGGAGTAACTTTGAGGTGATGGACAGAGTGGAAGTAGGATACAGGCTCCCTGCCCCCGTGAATTGTCCCAAAATTGTCCATGGCGTGATGATGGACTGTTGGAATCAGGACAGGACGCAAAGACCGAGatttgaagaaattttgaaaCGAATAGATGATCTCATTCGCACTCCAGAGTTGCTCAATGATGATCTAGTTTGTTATACAAGTGCTGTGTCAGCGGATTTCACCAAATTAAACACCATCTGTGAGTGGTTAAACAGTTTACACATGGGACAGTACACAGCTAACTTCAAAACTGCGGGCTACAAAGACTTGCCTCAAGTGACTTGCCTCAAAGACAGTGATTTAAAAGAAATTGGGGTATCTTTAATCGGTCACAGGAATAAGATCTACAAGAGTATAAAATCGATGAGAAAACATTTTGATAACATGCCTGAAGCTGTATGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q07496	Ephrin type-A receptor 4 OS=Gallus gallus OX=9031 GN=EPHA4 PE=1 SV=2
P54764	Ephrin type-A receptor 4 OS=Homo sapiens OX=9606 GN=EPHA4 PE=1 SV=1
Q03137	Ephrin type-A receptor 4 OS=Mus musculus OX=10090 GN=Epha4 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000240 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07699 all species →	Ephrin_rec_like	Tyrosine-protein kinase ephrin type A/B receptor-like	Domain	Interproscan
PF07714 all species →	PK_Tyr_Ser-Thr	Protein tyrosine and serine/threonine kinase	Domain	Interproscan
PF14575 all species →	EphA2_TM	Ephrin type-A receptor 2 transmembrane domain	Domain	Interproscan
PF00041 all species →	fn3	Fibronectin type III domain	Domain	Interproscan
PF01404 all species →	Ephrin_lbd	Ephrin receptor ligand binding domain	Domain	Interproscan
PF00536 all species →	SAM_1	SAM domain (Sterile alpha motif)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011641 all species →	Domain	Tyrosine-protein kinase ephrin type A/B receptor-like	Interproscan
IPR001660 all species →	Domain	Sterile alpha motif domain	Interproscan
IPR001245 all species →	Domain	Serine-threonine/tyrosine-protein kinase, catalytic domain	Interproscan
IPR013761 all species →	Homologous_superfamily	Sterile alpha motif/pointed domain superfamily	Interproscan
IPR003961 all species →	Domain	Fibronectin type III	Interproscan
IPR008266 all species →	Active_site	Tyrosine-protein kinase, active site	Interproscan
IPR027936 all species →	Domain	Ephrin receptor, transmembrane domain	Interproscan
IPR017441 all species →	Binding_site	Protein kinase, ATP binding site	Interproscan
IPR020635 all species →	Domain	Tyrosine-protein kinase, catalytic domain	Interproscan
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR050449 all species →	Family	Ephrin receptor tyrosine kinases	Interproscan
IPR001090 all species →	Domain	Ephrin receptor ligand binding domain	Interproscan
IPR016257 all species →	Family	Ephrin receptor type-A /type-B	Interproscan
IPR011009 all species →	Homologous_superfamily	Protein kinase-like domain superfamily	Interproscan
IPR036116 all species →	Homologous_superfamily	Fibronectin type III superfamily	Interproscan
IPR000719 all species →	Domain	Protein kinase domain	Interproscan
IPR009030 all species →	Homologous_superfamily	Growth factor receptor cysteine-rich domain superfamily	Interproscan
IPR008979 all species →	Homologous_superfamily	Galactose-binding-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46877 all species →	EPH RECEPTOR A5	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0004672 all species →	Molecular Function	protein kinase activity	Interproscan
GO:0006468 all species →	Biological Process	protein phosphorylation	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0004713 all species →	Molecular Function	protein tyrosine kinase activity	Interproscan
GO:0005005 all species →	Molecular Function	transmembrane-ephrin receptor activity	Interproscan
GO:0005887 all species →	Cellular Component	plasma membrane	Interproscan
GO:0007411 all species →	Biological Process	axon guidance	Interproscan
GO:0030425 all species →	Cellular Component	dendrite	Interproscan
GO:0048013 all species →	Biological Process	ephrin receptor signaling pathway	Interproscan
GO:0005003 all species →	Molecular Function	ephrin receptor activity	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0007169 all species →	Biological Process	cell surface receptor protein tyrosine kinase signaling pathway	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for g9960.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.