Gene detail

Detailed information of g9962.t1 in Tripedalia maipoensis

Genomic Location: scaffold_6:31924515...31941814
NR annotation: no NCBI-NR hit recorded
Species Tripedalia maipoensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

g9962.t1

ATGACTTTATCTTTACAGCAGGAACCTGAAGCAGACCAAGATATTCAGACTTGGGTCAGCATGGACAAATTCAATGCTATTGATCAGTTGTTGTCTCTTGGTTCGCCGCTGATCGTGATCTCTAATCGCCTTCCTTTTAAAATACAAGAGAGTAAGACAGAGAAGCCCAAAGTTGTTGCTTCAAATGGAGGATTGGTCACCTCATTGCTACCTATCGTTGAGATGACTAAGGGCACTTGGATCGGCAGTTCGGGGGGCCTTCTAGTTCAGGAGATCAATAATGATTATCAATCTGCTACACAACAGGATTATCGTGTGCGATGCGTCAACATACCTGGACCTATCAATGAGGTTTTCTACAATGAAGTGTGCAATGGCTGCCTGTGGCCACTGTTTCACTCAATGCCAGAGCGTGCTCTATTTCTGGAGAAACATTCCAAGGCTTATGAAATGGCGAACAACATGTTCACATCTGAGGCATTCCTTGAAATAGCAAAATGCTTTGGCACCTCAGAGAACCTTTCAGCTCCCGTAGTTTGGATTCATGATTTTCATCTGATGCTTATTCCTCAAGCTTTACGAGAAAACCTACGCCGACACGGCTACTCTTGCAAACTTATGTATTTTTTTCATATACCGTTTCCACCTAAACATATTCTGCAAATGTTACCTTGGTATCAAAGTATCTTAAAAAGCGTTCTTGCCTGTGATTTTGTAGCATTTCAGACCGTTGAAGATGAAAAGAATTTTCTCGACGCTTGCCACACTGTTTTGGGTTGCAGTATAGAGAAAGACCTAGGTTTTGTTACCTTCAAAGGTAGGGCATGCAAAACTGGAGCCTATCCCATAGCTATACCTTATGAAGAAATCAGTCATCTAGCAGAAAAGGGTACGATTAATAGATTTTGTCGTTTTAAAATAATTCTGGGAGTCGATCGTATGGATTACACTAAGGGACTATTGGAAAAGCTGAAAGGATTCGAGCACCTTCTGGAAACCTATCCTTCTTATCGAGAAAACGTTGTGCTGGTGCAGTTGGCAGTTCCTTCACGAGAGAATGTACCTCAGTATAATAGACTAAAGCACCTGTTTGAGCAGGAGGTAGGAAGAATAAATGGGAAGTATTCTACCTTAGCATGGTCACCCATCAAGTACCTTTACCGGGAACTGCCACGGAAAGACATTTTTACACTATACCGACAAGCCGACGTTGTTGCCGTAACCCCCATCAAAGATGGCATGAACTTGGTAGCAAAGGAATTTGTAGCCTGTCAAGGAAAGAACCCCGGTGTGCTGGTACTGTCAACAAAAGCCGGATCGGCAGAGACTATGACGGAAGCTATTCTGGTGGACCCCAGCATCAAGGAAAAACTAGCAGAAGCCTTCCGCGTAGGACTGGAAATGAGCAAGAAAGAGCGTCAGCTGAGAATGGATGCTTTAAAAGCGCGTGAGAAAGCACACGACGTCTATTTCTGGTTTGACAGTTTGCTGCAGGTTGTCCTCTCTCCCAAGGCTGGCCTAGCTATTTCAATTTCAAAGACAAGGTTTGGAGAAGTCCTTGGGGACAAGCTTTTTGCCAAAAATCACCTAACTGTTTTCCTGGATTATGATGGCACCTTGGCACCAATCTCTTCCACACCGAGTGAGGCATTGTTGCCCAGACAGTGCCGAGAGATTATTCTGCGGATGAGAGAAATTCCACGCTTAAAGCTTGTCATCTTATCTGGTCGCAGTTTATCTGATGTAAGACACATGGTGAATATAGAGGGAATTACTTACGCTGGAAACCATGGACTTCATATAATGAAGCCGTGTGGGGAAAAATTTACGCATCCGCAGGCACAGAAATTCAAAGAGCTTGTTCGGTGGACTTGTACAGAACTTGAAAGAAAGTTATCGTCTACAGAAGGCTGGGTTGAAAATAAGGGTCTTTCTTTAGCCTTCCATTACCGAAAGGTGGTAGGAAAAGAAGAGAGAGTAGCCATTGTTGACAAAGTGATCTACATTGTCGAAAGGTGTGGATTGGTAGTCAAACATGGCAAATGTGTCATTGAGGGATGCCCCCCTTGTACATGGAGTAAAGGCGATGCTGCTTTGCAGATTTTAGGAGATTTCTTCGGTGATAATTGGTCTGAACAGAGTATTGCTGTTGCTATAGGAGACGACGTGACAGATGAAGACTGTTTCCGGGCACTGAAAAGAAAAGGATATTCTTTCAAGGTCACTCATGGAAATCAGTCGTCGACTGCTGCGGATTATGCACTGGAGCAACCGAGCAATGTTTGCGAGTTGCTCGCCTGGATTTTGTCAAAGTATGAAGTATGA

Transcript

g9962.t1

Protein

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0012321 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00982 all species →	Glyco_transf_20	Glycosyltransferase family 20	Family	Interproscan
PF02358 all species →	Trehalose_PPase	Trehalose-phosphatase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001830 all species →	Family	Glycosyl transferase, family 20	Interproscan
IPR036412 all species →	Homologous_superfamily	HAD-like superfamily	Interproscan
IPR003337 all species →	Family	Trehalose-phosphatase	Interproscan
IPR023214 all species →	Homologous_superfamily	HAD superfamily	Interproscan
IPR006379 all species →	Family	HAD-superfamily hydrolase, subfamily IIB	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10788 all species →	TREHALOSE-6-PHOSPHATE SYNTHASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003824 all species →	Molecular Function	catalytic activity	Interproscan
GO:0004805 all species →	Molecular Function	trehalose-phosphatase activity	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0005946 all species →	Cellular Component	alpha,alpha-trehalose-phosphate synthase complex (UDP-forming)	Interproscan
GO:0005992 all species →	Biological Process	trehalose biosynthetic process	Interproscan
GO:0070413 all species →	Biological Process	trehalose metabolism in response to stress	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K16055	TPS; trehalose 6-phosphate synthase/phosphatase	EC:2.4.1.15 EC:3.1.3.12	Glycosyltransferases	ko01003	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.