Gene detail

Detailed information of g9965.t1 in Tripedalia maipoensis

Genomic Location: scaffold_6:31996640...32015518
NR annotation: no NCBI-NR hit recorded
Species Tripedalia maipoensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF16278 all species →	zf-C2HE	C2HE / C2H2 / C2HC zinc-binding finger	Domain	Interproscan
PF11969 all species →	DcpS_C	Scavenger mRNA decapping enzyme C-term binding	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR032566 all species →	Domain	Aprataxin, C2HE/C2H2/C2HC zinc finger	Interproscan
IPR013087 all species →	Domain	Zinc finger C2H2-type	Interproscan
IPR011146 all species →	Domain	HIT-like domain	Interproscan
IPR036265 all species →	Homologous_superfamily	HIT-like superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12486 all species →	APRATAXIN-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003824 all species →	Molecular Function	catalytic activity	Interproscan
GO:0000012 all species →	Biological Process	single strand break repair	Interproscan
GO:0003697 all species →	Molecular Function	single-stranded DNA binding	Interproscan
GO:0003725 all species →	Molecular Function	double-stranded RNA binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0030983 all species →	Molecular Function	mismatched DNA binding	Interproscan
GO:0033699 all species →	Molecular Function	DNA 5'-adenosine monophosphate hydrolase activity	Interproscan
GO:1990165 all species →	Molecular Function	single-strand break-containing DNA binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K10863	APTX; aprataxin	EC:3.6.1.70 EC:3.6.1.71 EC:3.6.1.72	DNA repair and recombination proteins	ko03400	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.