Detailed information of gene00064.t1 in Actinoscyphia liui

Genomic Location: contig004:167679...181316
NR annotation: XP_031565647.1, hemicentin-1-like isoform X2 [Actinia tenebrosa]
Species Actinoscyphia liui · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q96RW7Hemicentin-1 OS=Homo sapiens OX=9606 GN=HMCN1 PE=1 SV=2
D3YXG0Hemicentin-1 OS=Mus musculus OX=10090 GN=Hmcn1 PE=1 SV=1
Q29RU2Oncoprotein-induced transcript 3 protein OS=Bos taurus OX=9913 GN=OIT3 PE=2 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0000034 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF07679
all species →		I-setImmunoglobulin I-set domainDomainInterproscan
PF13927
all species →		Ig_3Immunoglobulin domainDomainInterproscan
PF01391
all species →		CollagenCollagen triple helix repeat (20 copies)RepeatInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR003598
all species →		DomainImmunoglobulin subtype 2Interproscan
IPR013098
all species →		DomainImmunoglobulin I-setInterproscan
IPR036179
all species →		Homologous_superfamilyImmunoglobulin-like domain superfamilyInterproscan
IPR013783
all species →		Homologous_superfamilyImmunoglobulin-like foldInterproscan
IPR007110
all species →		DomainImmunoglobulin-like domainInterproscan
IPR008160
all species →		RepeatCollagen triple helix repeatInterproscan
IPR003599
all species →		DomainImmunoglobulin subtypeInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR10075
all species →		BASIGIN RELATEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005886
all species →		Cellular Componentplasma membraneInterproscan
GO:0007156
all species →		Biological Processhomophilic cell adhesion via plasma membrane adhesion moleculesInterproscan
GO:0007411
all species →		Biological Processaxon guidanceInterproscan
GO:0030424
all species →		Cellular ComponentaxonInterproscan
GO:0070593
all species →		Biological Processdendrite self-avoidanceInterproscan
GO:0098632
all species →		Molecular Functioncell-cell adhesion mediator activityInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for gene00064.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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