Gene detail

Detailed information of gene00066.t1 in Actinoscyphia liui

Genomic Location: contig004:189451...191838
NR annotation: XP_022805709.1, uncharacterized protein LOC111342849 [Stylophora pistillata]
Species Actinoscyphia liui · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

gene00066.t1

ATGTCAGTAATCGACATTTTTAGTCGATTCGTCTTCTTACGCCCTCTGCAAACAAAGGAGTCGGCGGAAGTGGCTGAAAATCTGCTAGATATATACACTGAGCACGGCCCTCCTGAAATACTCCAGAGTGACCAGGGTACTGAGTTCAAGGGGGTCGTAAAGACAGTGTGCGAGGCACTGAACGTACGAATCATAAAGAGTTCGGCATACAGCCCTCAAACGCAAGGTAAAGATGAACGCTCACATCGAACCTGGAAAGAGAAATTAGCATTCGACTTCCAAAAAGACGAATTAGAGTTCAATTGGGTGAGAGAACTTCCAACATACCAGCAAATATACAACGAATCACCCCACAGCTCACTTGGTTACTTGTCGCCCTTCGAGGTTTACTTCGGTAGAAAACCTAACAGAGAAAAGAATAAATTTGTGTTTGGAGATCAAAATGTGTCCTTTGACGTCCCTGAGCTCGAGGAAAACGTGGACATCGACTTTTGTAATATAGATATCGAAGAAAGTAAATTAAAGGAACACCGCAATGAACATCAGCTCATAAGAGACAAGGCGCTAGAAGCCTCGAACAAGGCTGCACAGAATATGGTGAAGCGAGAACTGAAGAAGAATCCGCCGTCCCTTTATTACCAGGGAGAATCCGTTCGTGTTCGCCTTCCAAGATCAAAGAAGAACGTAAAAGGGAAGAAAAGTTATTTGAAAGGTAGTTGTGAGGGACGAGTTCTGGAATCAGATCACTCGACTCACCGCTACCTTATTGAGTTCAAAGACCCATTTACTGACAAAGCAAAATCACGCTGGTTTAAAGTTGATGACGTAACTTCGTTAACGAGGGAGGAAGAAAACGAAAGACAAAGAAGTGCTCGTGAAAAAAAAGGTGTCCCTACGAAAACGACGCGGGTAGCAACGGCGGATGAGATTAGTGCATTGGAGTGTACCATCAAAGAAAAAGGGAAGAAAAGTTATTTGAAAGGTAGTTGTGAGGGACGAGTTCTGGAATCAGATCACTCGACTCACCGCTACCTTATTGAGTTCAAAGACCCATTTACTGACAAAGCAAAATCACGCTGGTTTAAAGTTGATGACGTAACTTCGTTAACGAGGGAGGAAGAAAACGAAAGACAAAGAAGTGCTCGTGAAAAAAAAGGTGTCCCTACGAAAACGACGCGGGTAGCAACGGCGGATGAGATTAGTGCATTGGAGTGTACCATCAAAGAAGTGATGTCATTCGAGCAACTTCGCGGAGATACTGTGAACTTATATTTTAACTGCTATCTAAGGAATGAAGAAGAAGCTTTTAGGGAATATATGGATTTCGCCACAACATATTTCTACCCATCATTATTATTACCGGTTGACCACAATAAACACACGAATGGCAAAACGCTATGGGAATACGAACAGCTTCTTGTACCTGTCAACCTCCCTAAAGAAAACCATTGGCTACTTGTCGTCATCAGTATTCTTCATTTGTGTCTGTTTATATATGACTCTTCTTCCTGTTCCAATGAGACATATCGAAATATATTTAATACCATCAAGACAAAGTACATACAAGAGCAATTGAAGTGGCTACCTGGTGAGGATAGAGAATTTTACAAGGAACAAAATTGGGATGAGGCCTTACCTCATTGCCCAAAGCAAGAAAACGACAGGGACTGCGGCATATTCACATGCTTGTTTGCAAAAGAGCTCCTAAGAAATCCTCGAGATGACCATAGCATAAATTTGTCTGGCGATGAACACAGGAGTCAAGTGGCCTATGACCTACTTTCAATTGCGCGTGCCACCAAAGGAGCTGCTCCATCCATTTTCGAGTGGATGGTAAGTGAAGAAGATGTATCGTCACCAAAGCTTAAATTGGATGAGGAAGTTGCCAAAGCAGGGCTTTCGTATCGCCAGCCCCCAACTCCAATGGATGGAAACTGCTTGTTCCATGACGTGAGTGATCAGCTGGCTAGGCTAGGATTACCGCCCAAAAGTGCCGCGGAGCTGCGCTCCGAAGTGGTTACCTACCTTAAAGAAAATCCGACTACACCAGACGGAGGTCATTTGAGAGATTTTGTAAAGCATAGGGCGTGGGACACTTGGCTTAGAAGAATGTTGATCTCTGGAGAGTGGGGAGACTGGATTGTCATTTGGGGACTAGTCAATATGCTCAAAATATCAGTGGCAATTATTTCAAGCTTAGGAGAAAGCGGGCTGCATATCATAACTCCAAGTGGCATCGATCAAGAGCAAAATATTGACGGAATGGCTTTGTTGGGGCACCAGGCAGAGGTACATTACCATAGCCTCGAACCAGCACAGCTTTGTGAGAGTGGAGAAGATAATGATGGCACCAAGGAAATATTAATCGGATCACAAAAATACAAATAA

Transcript

gene00066.t1

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000295 (this species only)
Ubiquitin family	DUB\|ULP\|ULP · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02902 all species →	Peptidase_C48	Ulp1 protease family, C-terminal catalytic domain	Domain	Interproscan
PF02338 all species →	OTU	OTU-like cysteine protease	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003653 all species →	Domain	Ulp1 protease family, C-terminal catalytic domain	Interproscan
IPR036397 all species →	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR001584 all species →	Domain	Integrase, catalytic core	Interproscan
IPR003323 all species →	Domain	OTU domain	Interproscan
IPR012337 all species →	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR052160 all species →	Family	Gypsy Retrotransposon Integrase-like	Interproscan
IPR038765 all species →	Homologous_superfamily	Papain-like cysteine peptidase superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47266 all species →	ENDONUCLEASE-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006508 all species →	Biological Process	proteolysis	Interproscan
GO:0008234 all species →	Molecular Function	cysteine-type peptidase activity	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0015074 all species →	Biological Process	DNA integration	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for gene00066.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.