Gene detail

Detailed information of gene00124.t1 in Actinoscyphia liui

Genomic Location: contig011:35154...43397
NR annotation: XP_020909702.1, uncharacterized protein LOC110247582 isoform X2 [Exaiptasia diaphana]
Species abbreviation ALIUI · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

gene00124.t1

ATGGCTCCAAGCCGTGGGCTAAGATTTGATGGGCAGCTGTTCTTTGTGTATGACCGACAGGCAGTTACCAGAGAAGAGGACCCACCAGAGAATGCTATCATTTACTTTTCACCATCTTCTGCCCCAATTGAGAGTCGCATCAGTATATGTGGACAGCTAGTTGGTATAAGCAACTTTCTCTCTACAGTTTTGCACTTTGCTCCAGTTCTTATTAATCTGAAGTCTGAGAAAGTGGCATTGTGTCAGTCTGGTCGATACACACTGGCACTAGGAGGTGGTATTAGTGAACCAGAATCATTGCTAACTAGACAACTGGAAACACTTTTCAACACATTTGTGTTTTACCATGGCTCACTCCAATCTGTTCGTGATTTGTCAAAAGATCAAGCGTCATTTTTGAAAAACATGTCAATTATATGGGACTGTTATTTACCATTTATTCGTCACTATGGAAACACACTACCAGCTGTCTTCAATCCATTACCATTTCTCAAAGTTCCAAAGAATTCTTCTGGCTGTTTCCTGAAAGCTTCTCATATCCTGCAAACCTGTCAACGACGTCACCATATTCTTGGTGGCTGTATAATTCACAAGAATTCTAACCATGACAACTTTAGTGTTTTGTGTACTCAACTAGAGACTTGCATTACCAGGAGACTGCTCTTGCTAAAACCAAACCAATGTCATCATCCTGCAAAGCAAGTACAAACAGTTATCAAGTTACCATATGGTGTACGTATTCTACATTCGTTTATCACTGGTTGTGAATATGAAAGACTTTTAAAGGCATTTCTGCTATCACCATATCATCATAGCAAAAGAGACTGTACTGCATCGCAACAGCAACAGCATCTCACTTCAAGTAAGAGCATTAAGTCTGATAAATATAATGTTCACTTGGAGGACACAACTTCAAATGCAACAAGAAATGGACAAGAAAATAAACTTAGGAAAGAATTTTTATTAGAGAAAGAAAGTAGCAAAAGTACCGTTTATAATGAATCAAATATGGAAGACTGTAAAGACAAAACTATAGCTGAGGAAAAGGCAATGTTTAAGGTGACAGTAAGTGATAGTAATGTGCAACAATCAAGAGAAATTGACCAAAAGAGCTGCAAGTTATCTCATGAGAATGATGTATTAGACAGCAGCAACTGTTGTACTTACGATGAATATCATGAATCTTGTATATACAGCAATGTGGATGCTTGTAAAGAATTATTACTAGGGGATGACGACTTGACAATGGATGAAATAGACATAAAAGGGTTGCGCATTGTTAAAGGCAACGCCTTACTAAAGAACCAAATAGTCCATGAGTCACAAGATGATGAAGTTGAAATTTGTAATGAATTAATTGAATCGCTTGTCAAACAAGTTTGTACCGAATGTGAAAGCAGTATTGCAACCAATTGCAAAACCGTTTGTAAATGTTCAAGTTTGCATGATTCCAGTAGTGTTTCTATAAGTGGACTGGACAAGAGAACTTCTTGCTGTAGCCTTTCCAATAGTCTACCGCTGGCTGGCAACTCTTCTTCTAAAGAAAAGGCAAATGAACAAAATGAAGAAAACCAAGTCCAACAAGGAATGACACTAGTTCCAAGTGATGGTGTCACGTCTGTCTATGTAGAAAGTCACAAAGAAAACCAAGTCCAACAAGGAATGATACTAGTTCCAAGTGATGGTGTCACGTCTGTCTATGTAGAAAGTCATGAAGAAAACCAAGTCCAACAAGGAATGACACCAGTTCCAAGTGATGGTGTCACGTCTGTCTATGTAGAAAGTCACAAAGAAAACCAAGTCCAACAAGGAATGATACTAGTTCCAAGTGATGGTGTCACGTCTGTCTATGTAGAAAGTCATGAAGAAAACCAAGTCCAACAAGGAATGACACTAGTTCCAAGTGATGGTGTCACGTCTGTCTATGTAGAAAGTCATGAAGAAAACCAAGTCCAACAAGGAATGACACTAGTTCCAAGTGATGGTGTCACGTCTGTCTATGTAGAAAGTCATGAAGAAAACCAAGTCCAACAAGGAATGACACTAGTTCCAAGTGATGGTGTCACGCCTGTCTATGTAGAAAGTCATGAAGAAAACCAAGTCCAACAAGGAATGACACCAGTTCCAAGTGGTGTTAATTTTAACTGCGACAAAAAAACTCAACTTTCTACAGAACAAGGGAATAATATCCATCCTTTTCCCATCACGCCTAAAGGCTTGCATTTCCATGGAGATCAGCTTGCTAATACAAGTACATCCCCAGAAGAACCCAGTCGTACTGAAGATTACCACGATACCATAGAGGATCTTGTTACTGACAGCGAAGAAACTATGTCAGGCTTTGACCAAAGAACAGTTTATGCCATTCTACAGAACTATCAAAACCTTAAGGCAAGTGGCTTAATGGTTAATAAATATTCATTGTTGAATTTGAGCCAGCACGAAGACAAGAAGATTGAAAAAGACTTCTTTAAGGACTTGATTCGACAAGAGGAAGTGTCGAGTAATACTGTTCTAAATAAGGAGGTAAGAAATCAGGATGGCCAACTTAATCACAGTTCATCTCTACACCAGGACTCGTGTAGACCACAAGAAAACGTCCGTGAATCTGGTTTATCTTACAGCATATCTTCAGAATCACCAGCTTACGGGTGTTCAGGGAATTGTCAGACATCTCTGGGTGATTCGGGACTCTGTTTATTTCATGGATCGTCTGAAAGCTCGTTTCCTCAAGCCGAGAGTACAAATGTTAATCCAACGAATCCTGGCTTCTCCCGGCTAGACTCAGTTGATAGTCTCAGTGAGTTCAGTTCACCCTCTGAACTTGATCTTGGCGTGAGCAGTAACACAATTGATGCAGTAGCTGAATCAATGGAACAGAAACAAGATGAGCAAGCAGACACGGACGACATGGACAACAATATATATCAGATTGACGAGTTAGTCCACATTAACCTCTACGTTCAGGCCCATTCAAATACAGTGTTGATTCTACTTGCTGACTCTAGCTTAAGTACGGACCAAGAAACAATAAAAGCACTTTGGAAGACGACTTTAAATGAACTTGGTGAGTTGGAAGTCCATTTGAACCAATGCACTGAGAATCCCGACCATACTGAGGCTAAACCTGATGAGTGTGGTATTCTTGTTTATGAAACCATCAATAAAACTACAAGAGGAAATCTGACTGAGCCTGTGCTACAGGTTGATCACAAGTTTTGTGAAACTGCCAAAACCATCCATGAACAGTTTACTAACTGTGCATCACTCAAGGCCATCACTTTAAGAGACAATACCGCAGCCGTCCATTGTCAGAGGAGCTTCGATCAAGAGGTCTACTTTCACAAGAAGGGGCCTTTAAAGCCGTTTCGTGGCAGTCCTTCTTTGCGAGACTCGGCCTTTGGTTTAGAGAAACGTGCTCGTAAACAATTGAGGAAAGATTATGATATTAATGTATTTTAA

Transcript

gene00124.t1

TGAACATCTACTTGCAGCGTTGATTATTTATTGGTTGATAGCACTATGGCTCCAAGCCGTGGGCTAAGATTTGATGGGCAGCTGTTCTTTGTGTATGACCGACAGGCAGTTACCAGAGAAGAGGACCCACCAGAGAATGCTATCATTTACTTTTCACCATCTTCTGCCCCAATTGAGAGTCGCATCAGTATATGTGGACAGCTAGTTGGTATAAGCAACTTTCTCTCTACAGTTTTGCACTTTGCTCCAGTTCTTATTAATCTGAAGTCTGAGAAAGTGGCATTGTGTCAGTCTGGTCGATACACACTGGCACTAGGAGGTGGTATTAGTGAACCAGAATCATTGCTAACTAGACAACTGGAAACACTTTTCAACACATTTGTGTTTTACCATGGCTCACTCCAATCTGTTCGTGATTTGTCAAAAGATCAAGCGTCATTTTTGAAAAACATGTCAATTATATGGGACTGTTATTTACCATTTATTCGTCACTATGGAAACACACTACCAGCTGTCTTCAATCCATTACCATTTCTCAAAGTTCCAAAGAATTCTTCTGGCTGTTTCCTGAAAGCTTCTCATATCCTGCAAACCTGTCAACGACGTCACCATATTCTTGGTGGCTGTATAATTCACAAGAATTCTAACCATGACAACTTTAGTGTTTTGTGTACTCAACTAGAGACTTGCATTACCAGGAGACTGCTCTTGCTAAAACCAAACCAATGTCATCATCCTGCAAAGCAAGTACAAACAGTTATCAAGTTACCATATGGTGTACGTATTCTACATTCGTTTATCACTGGTTGTGAATATGAAAGACTTTTAAAGGCATTTCTGCTATCACCATATCATCATAGCAAAAGAGACTGTACTGCATCGCAACAGCAACAGCATCTCACTTCAAGTAAGAGCATTAAGTCTGATAAATATAATGTTCACTTGGAGGACACAACTTCAAATGCAACAAGAAATGGACAAGAAAATAAACTTAGGAAAGAATTTTTATTAGAGAAAGAAAGTAGCAAAAGTACCGTTTATAATGAATCAAATATGGAAGACTGTAAAGACAAAACTATAGCTGAGGAAAAGGCAATGTTTAAGGTGACAGTAAGTGATAGTAATGTGCAACAATCAAGAGAAATTGACCAAAAGAGCTGCAAGTTATCTCATGAGAATGATGTATTAGACAGCAGCAACTGTTGTACTTACGATGAATATCATGAATCTTGTATATACAGCAATGTGGATGCTTGTAAAGAATTATTACTAGGGGATGACGACTTGACAATGGATGAAATAGACATAAAAGGGTTGCGCATTGTTAAAGGCAACGCCTTACTAAAGAACCAAATAGTCCATGAGTCACAAGATGATGAAGTTGAAATTTGTAATGAATTAATTGAATCGCTTGTCAAACAAGTTTGTACCGAATGTGAAAGCAGTATTGCAACCAATTGCAAAACCGTTTGTAAATGTTCAAGTTTGCATGATTCCAGTAGTGTTTCTATAAGTGGACTGGACAAGAGAACTTCTTGCTGTAGCCTTTCCAATAGTCTACCGCTGGCTGGCAACTCTTCTTCTAAAGAAAAGGCAAATGAACAAAATGAAGAAAACCAAGTCCAACAAGGAATGACACTAGTTCCAAGTGATGGTGTCACGTCTGTCTATGTAGAAAGTCACAAAGAAAACCAAGTCCAACAAGGAATGATACTAGTTCCAAGTGATGGTGTCACGTCTGTCTATGTAGAAAGTCATGAAGAAAACCAAGTCCAACAAGGAATGACACCAGTTCCAAGTGATGGTGTCACGTCTGTCTATGTAGAAAGTCACAAAGAAAACCAAGTCCAACAAGGAATGATACTAGTTCCAAGTGATGGTGTCACGTCTGTCTATGTAGAAAGTCATGAAGAAAACCAAGTCCAACAAGGAATGACACTAGTTCCAAGTGATGGTGTCACGTCTGTCTATGTAGAAAGTCATGAAGAAAACCAAGTCCAACAAGGAATGACACTAGTTCCAAGTGATGGTGTCACGTCTGTCTATGTAGAAAGTCATGAAGAAAACCAAGTCCAACAAGGAATGACACTAGTTCCAAGTGATGGTGTCACGCCTGTCTATGTAGAAAGTCATGAAGAAAACCAAGTCCAACAAGGAATGACACCAGTTCCAAGTGGTGTTAATTTTAACTGCGACAAAAAAACTCAACTTTCTACAGAACAAGGGAATAATATCCATCCTTTTCCCATCACGCCTAAAGGCTTGCATTTCCATGGAGATCAGCTTGCTAATACAAGTACATCCCCAGAAGAACCCAGTCGTACTGAAGATTACCACGATACCATAGAGGATCTTGTTACTGACAGCGAAGAAACTATGTCAGGCTTTGACCAAAGAACAGTTTATGCCATTCTACAGAACTATCAAAACCTTAAGGCAAGTGGCTTAATGGTTAATAAATATTCATTGTTGAATTTGAGCCAGCACGAAGACAAGAAGATTGAAAAAGACTTCTTTAAGGACTTGATTCGACAAGAGGAAGTGTCGAGTAATACTGTTCTAAATAAGGAGGTAAGAAATCAGGATGGCCAACTTAATCACAGTTCATCTCTACACCAGGACTCGTGTAGACCACAAGAAAACGTCCGTGAATCTGGTTTATCTTACAGCATATCTTCAGAATCACCAGCTTACGGGTGTTCAGGGAATTGTCAGACATCTCTGGGTGATTCGGGACTCTGTTTATTTCATGGATCGTCTGAAAGCTCGTTTCCTCAAGCCGAGAGTACAAATGTTAATCCAACGAATCCTGGCTTCTCCCGGCTAGACTCAGTTGATAGTCTCAGTGAGTTCAGTTCACCCTCTGAACTTGATCTTGGCGTGAGCAGTAACACAATTGATGCAGTAGCTGAATCAATGGAACAGAAACAAGATGAGCAAGCAGACACGGACGACATGGACAACAATATATATCAGATTGACGAGTTAGTCCACATTAACCTCTACGTTCAGGCCCATTCAAATACAGTGTTGATTCTACTTGCTGACTCTAGCTTAAGTACGGACCAAGAAACAATAAAAGCACTTTGGAAGACGACTTTAAATGAACTTGGTGAGTTGGAAGTCCATTTGAACCAATGCACTGAGAATCCCGACCATACTGAGGCTAAACCTGATGAGTGTGGTATTCTTGTTTATGAAACCATCAATAAAACTACAAGAGGAAATCTGACTGAGCCTGTGCTACAGGTTGATCACAAGTTTTGTGAAACTGCCAAAACCATCCATGAACAGTTTACTAACTGTGCATCACTCAAGGCCATCACTTTAAGAGACAATACCGCAGCCGTCCATTGTCAGAGGAGCTTCGATCAAGAGGTCTACTTTCACAAGAAGGGGCCTTTAAAGCCGTTTCGTGGCAGTCCTTCTTTGCGAGACTCGGCCTTTGGTTTAGAGAAACGTGCTCGTAAACAATTGAGGAAAGATTATGATATTAATGTATTTTAACTATAGATGCTTGTCAGATAGAGGAGAACAACTATATACATGGACATTTTATTATACTCTTCGAATTCTTACAAGATTTGGACTGACCCAGCAGGGACGAAGCTAATCGAGGCGGGTCATTCAAATATACATTAATTGTATAACATTTACATTATGAAATAAATTACCTGTTTTACAAAA

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005674 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF19031 all species →	Intu_longin_1	First Longin domain of INTU, CCZ1 and HPS4	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR043987 all species →	Domain	CCZ1/INTU/HSP4, first Longin domain	Interproscan
IPR026091 all species →	Family	BLOC-3 complex member HPS4	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14407 all species →	HERMANSKY-PUDLAK SYNDROME 4 PROTEIN LIGHT-EAR PROTEIN-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016192 all species →	Biological Process	vesicle-mediated transport	Interproscan
GO:0005085 all species →	Molecular Function	guanyl-nucleotide exchange factor activity	Interproscan
GO:0005765 all species →	Cellular Component	lysosomal membrane	Interproscan
GO:0006605 all species →	Biological Process	protein targeting	Interproscan
GO:0017137 all species →	Molecular Function	small GTPase binding	Interproscan
GO:0031085 all species →	Cellular Component	BLOC-3 complex	Interproscan
GO:0031410 all species →	Cellular Component	cytoplasmic vesicle	Interproscan
GO:1903232 all species →	Biological Process	melanosome assembly	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K20194	HPS4; Hermansky-Pudlak syndrome 4 protein	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.