Gene detail

Detailed information of gene00138.t1 in Actinoscyphia liui

Genomic Location: contig012:80288...88553
NR annotation: XP_028518632.1, coatomer subunit delta [Exaiptasia diaphana]
Species abbreviation ALIUI · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

gene00138.t1

ATGGGTATTACATGTTGTTCACTCAAAGGAATAAATCTGGACGAAATGCCGAAGTTAGCTCCCAAACTCATCTTCGCAAGTGCCGAGGAAGTGCAAGGAATCGCATTCCAACGACTGTTGAAGGATCCCAAATCATTTCTCCACACGAATCTTGACCTAGTCGTTGTTGACGAGTCACACACAGTCGAAACGTGGACAGGAGAAAGACCTGCAGGGTCAGGTAAAGCTATGCGGAAACTTGGTGGCAAAACTAAAGATGTTGACTCGTTTGTTGACAAGCTACGGTCGGAAGGAACAGAGGTCATTAGCCATAAACAGAAGTCTTCTCTGTCAAAACCTGCTGCTGCTCCTGTGGTCAATGTGTCTAGTATCCATCTTAAAACTGATGAGAAGATCACATTAACAGCAGTAGCTAAAATTAAACTGTCTGTGGATAACAACGACGACAAGGGCTTTCAACTACAGACACATCCCAATGTAGACAAGAAGGGATTTTCTTCAGATAATATCATTGCTTTAAAGCAGGCAGGAAAATCATTTCCAATTAACTCAGACATTGGTTTACTAAGATGGAGATTGCAATCAACAGATGACAGTCTTATGCCTTTATCTATTAACTGTTGGCCTTCTGAAAATGACGGACAGTGTGAAGTTAACATCGAGTATGAACTTCTTCAAGAAAACCTTGAACTTAAAGATGTTGTAATCACAATACCAGTGCCCCACGGTGTTGGCGGACCAGTTGTTGGAGAAATCGATGGTGAATATCACTACAACCACAAACACTCTCAACTAGAGTGGCAGATACCTGTCATGGACACAGAGAATAAAAGTGGAAGCATGGAATTTAGCATCGCTGGCCATCCAGGAGACTTCTTCCCTGTTACTGTAACGTTCTTCTCCTCCAAGACATTTTGTGATATTAAGATCACCGAAGTCATGAATGTTGAAGACAGTAAACCAGTCAAGTTTTCGCAAGAAATCTCTTTCACTGCAGATAAATATGAAATTGTATAAGAATCAAATCCCTTGTTTATCAAACAAAAATAGTTATTAATATCACACATAACTTGTCATCAGTAACTATTGTACAGCTTACAAAGACACTTTTCCATCCCAATCGGCTATTGAGTATCATGATGAATGAAAAAGTTGCCTTGAGCAATATGGGTGATATGCAAACAAGTTGCCATGATAGCAATGTATTTCTTGGAAATGGTTGCTATGGAGATGGTGAGATCACTTTCCTTTCAAATAAATATGATGCACGAGATGCATAAAAAGTCTTATTTACTCTGGTGACAAGTCAATGTCATTACTATGCAAAAATGACGTGTTTCCTTAGCAAAACAGTCCCCAGAAATAGTCCTTATGGAAATGAGTAGGTTTTAGGTTGGATATTGAAGAGTCATACTGTAACATACATGGCATTAAATCACTGGAAAACATTTATAAAATCCATGAATGGTTTTTGTCGTATTCCCATTGATGGTCAAACTATTGGCCATTTATATCAAATTGGAATAGAGTACTAAAGTGTGACGTCACGAAAACATTAATTTTGGCTTTATCAATTTTTGATTTCTAAAGTCGATAGAACATCAAGAAAGATGTTTACATGTCAAGTTTCATGGGAATCGGTTAAATAACAGCTGAGATATGGCCGGTTGAATATTTAATTTTCCTAGTATACAAATCACTGCATTTTTGTCTGGGTTCCTAATGTTAGGAACTAAGCTGAAAATACAGTGATTTGTATAGGAAAATTATATTCCAAATGGGAATATGACAAAAACCATTCATGGATTTTATAAATGTTTTCCTGTGAATCTGCCTTTTCTTAAAGTAGTACCTCATAGAAAGTAAACAAAAATAATGGAAATCCTACTTTTAGATAAATAAAAACCTGGAAAATATTTACATCTGTGCTATGATTTTAGAAAACATAACGTTTCTACACCTGGTGTCTGCTTGTATTTCTAGTTTTTGGGCCTTTTGTGACTCCATGAGCTTAGAAATACTGACTG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P53619	Coatomer subunit delta OS=Bos taurus OX=9913 GN=ARCN1 PE=1 SV=1
Q5RA77	Coatomer subunit delta OS=Pongo abelii OX=9601 GN=ARCN1 PE=2 SV=1
P48444	Coatomer subunit delta OS=Homo sapiens OX=9606 GN=ARCN1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005634 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00928 all species →	Adap_comp_sub	Adaptor complexes medium subunit family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027059 all species →	Family	Coatomer delta subunit	Interproscan
IPR036168 all species →	Homologous_superfamily	AP-2 complex subunit mu, C-terminal superfamily	Interproscan
IPR028565 all species →	Domain	Mu homology domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10121 all species →	COATOMER SUBUNIT DELTA	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006888 all species →	Biological Process	endoplasmic reticulum to Golgi vesicle-mediated transport	Interproscan
GO:0006890 all species →	Biological Process	retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum	Interproscan
GO:0030126 all species →	Cellular Component	COPI vesicle coat	Interproscan
GO:0051645 all species →	Biological Process	Golgi localization	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K20471	COPD, ARCN1, RET2; coatomer subunit delta	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.