Gene detail

Detailed information of gene00415.t1 in Actinoscyphia liui

Genomic Location: chr1:2237200...2247458
NR annotation: XP_031564437.1, tip elongation aberrant protein 1-like [Actinia tenebrosa]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

gene00415.t1

ATGGGTAACGAGGGTTCAATTCCAGTTTCGTATGGAAGAAAGCTATTAAATAATGCCAAAGTAGACTGGATTAAAGTAGAAGATAATGATCTGGCTGCTCGCGATGGTCACTGCTCGGCCAGTGTTGGCTCGAAGCTGTTTGTTTTTGGTGGCGTTCGGTGGGAGGAAGCAATCGGAGAGGTTTCTGAATCCAATGAAACAATTGTATTCGATACTAATGACCAGAAATGGAGTATGGCTACTGTAAGTGGTTGTGTGCCATCATCTAGGTGTGCTGCTACCATGAGTAGTGTGGATAAAAACCTCTATGTGTTTGGTGGGCTAAGTCAACAAAGTGGTTGGTTGAATGACTTGTATGTCTTGGATACAGACACATTGCAATGGAATCAAGTAGAAGAAATAGGAAACTGTCCATCACCCAGAGATAAACTGTGCTCAGTATCAATAGGATCAAAAATCTATGTATTTGGAGGGTTTGGTCCTAAAGCAGAAAGTGAAGCATGTTCTGAAGAAGCTGAGTTTCAGTGGTTCAATGATTTGTACTCATTTGATACAGAAACATGCATCTGGAAAAAGTTATCTACAAGTTCAGATGGCAGTCCAACTCCACGAGCTGCTCATGGCATGTGTGCTATTGACAATCAACTTGTCATATTTGGTGGAAGGGACAACATTTCAAGACAGCATGATGTTTACATTCTTAACTTAGAGATGTTGGCCTGGGAAAGTTTCAAAACATCAGGAAGACAACCTGAACCAAGATCATTTCATACTTGTGTTGCAGTTGGTAAACGAATGGTTGTGTTCGGAGGAAGAGGAATACAAGAACAACATTTCAATGATATACATGTGTTTGACATTGATAAAAAAGAATGGTTCCAGCCATCGGTACATGGTGACATTCCATTGGCGAGAGGACTTCACACTCTCAACGTAGTCAATGAAAACATCGTGGTATATGGTGGTTCATCTGCTTATGATAACGACACTATGCAGCTTATGGAGTATCATAATGACACTTTTCTTATCAAAAAAGAGCAACTCCTTGAAGGAGAGTCCCTTGGACCAGACCCAGACGATAACCCAGAAAGTATGGCCACTCTTATACCCACACAGTTACCGACTACGTCCTTGGGGACAATCAAAGAGTGCGACGAACAGAAAGGTCTACAAGAAGACTTTTCTGTGGAATATTTCAACATACGATAGCATACATGCACAATCTAGATGGGATCAGTGCAGGGTCCCTCACACCTCCCTAATGAGACCACTACACGGGACAAATTTTAGCTTTTGTATAAAGGCTTCTAAAATAAAGCAGTCCTGTTAAACAGACTATGATTAAAGTTTGTCTCAAGTAGTTTACCACATGGATGGCTATCAGTTTAGTGTCATCCTTGGGGACCCAGGGTGTCGGGGAAGGGGGGAGGTTTTCCCTTCCATTCCCCACCCCTTCCCGACGACCTGGGTCCCTGAGGATGTTTTAGTGTAGGTCTGTGATGTAATTGAACTACAAGCTCGAAACTGTGATTTAGACCCCATTCAAATAAGCTATTATCCAATCGCCAACAAATATTTTCAAAATCAGGTTTTTGAAAACATGTTCGGGCAAAAGCGTAGGGAAGCTGTTGGCCATGTACCATGGGTTAGTGTATAAGTAATTAATGTATAGGTTTACAATCACGGACCCTGAATATCTTGCAAAAATGCTTAACACCCCTGGGATAATTTAAGTTGCACTAAAATAAATGCTATTTCGCCACTCTCAATGTTGTTCGATGATTGCTGAAGTACCACAGTTGTCTGGTCAACGCTGTACTGGTGGGTACAAGAATAAAAACCGTATAATTTTGAAGACAAAAAAGATATAGGAGACTAGTCGTTTCTAATAGAAAGTGAAGTGCTGCGAGTTGCACACTGTCGTACTACTGTAGCTTTCAATGCATATTATATATGTGGGTTTCACTTTGTCCCTTGTCAGCGAGGCGAATTGAGTAAAATAA

Protein

Uniprot

Uniprot term	Description
Q9MA55	Acyl-CoA-binding domain-containing protein 4 OS=Arabidopsis thaliana OX=3702 GN=ACBP4 PE=1 SV=1
Q8RWD9	Acyl-CoA-binding domain-containing protein 5 OS=Arabidopsis thaliana OX=3702 GN=ACBP5 PE=1 SV=1
Q86L99	Rho GTPase-activating protein gacHH OS=Dictyostelium discoideum OX=44689 GN=gacHH PE=3 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13418	Kelch_4	Galactose oxidase, central domain	Repeat	Interproscan
PF01344	Kelch_1	Kelch motif	Repeat	Interproscan
PF13415	Kelch_3	Galactose oxidase, central domain	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR015915	Homologous_superfamily	Kelch-type beta propeller	Interproscan
IPR006652	Repeat	Kelch repeat type 1	Interproscan
IPR052257	Family	Kelch domain-containing E3 ubiquitin-protein ligase complex component	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46228	KELCH DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan