Gene detail

Detailed information of gene00512.t1 in Actinoscyphia liui

Genomic Location: chr1:4256822...4264703
NR annotation: KXJ07788.1, Polycystic kidney disease and receptor for egg jelly-related protein, partial [Exaiptasia diaphana]
Species Actinoscyphia liui · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

gene00512.t1

ATGTGATTTGTACTGTTGTCCAATGGCCAGTCGTGTGTAGATATCGACGAGTGTTCCCAGCAGAGACACAATTGCAGTCAAGTATGTAAGAATACTGTAGGAGGATATCAGTGTTCGTGTCATCGAGGATTTGTACTGTTGTCTGATGGCCAGTCGTGTGTAGATATCGACGAGTGTTTCCAAGAAAGACACAATTGCAGTCAAGTCTGTAACAATACTGTAGGAGGATATCAGTGTTCGTGTCATCGAGGATTTATACTGTTGTCCGATGGCCAGTCGTGTGTAGATATAGACGAGTGTTCACAGCAGAGACACAATTGCAGTCAAGTATGTAAGAACAGTGTAGGAGGATATCATTGTTCGTGTCATCCAGGATTTATACTGTTGTCCGATGGCCTCTCGTGTGTAGATATCGACGAGTGTTCCCAGCAGAGACACAATTGCAGTCAAGTATGTAAGAACAGTGTAGGAGTATATCATTGTTCATGTTATCGAGGATTTGTACTGTTGTCCGATGGCCAGTCGTGTGTAGATATCAACGAGTGTTCCCAGCAGAGTCACAATTGCAGTCAAGTCTGTAACAATACTGTAGGAGGATATCAGTGTTCGTGTCATCCAGGATTTGTACTGTTGTCCGATGGCCAGTCGTGTGTAGATATCAACGAGTGTTCCCAGCAGAGTCACAATTGCAGTCAAGTCTGTAACAATACTGTAGGAGGATATCAGTGTTCGTGTCATCCAGGATTTGTACTGTTGTCCAATGGCCAGTCGTGTGTAGATATCGACGAGTGTTCCCAGCAGAGACACAATTGCAGTCAAGTATGTAAGAATACTGTAGGAGGATATCAGTGTTCGTGTCATCGAGGATTTATACTGTTGTCCGATGGCCAGTCGTGTGTAGATATAGACGAGTGTTCCCAAGAAAGACACAATTGCAGTCAAGTCTGTAACAATATTGTAGGAGGATATCAGTGTTCGTGTCATCGAGGATTTATACTGTTGTCCGATGGCCAGTCGTGTGTAGATATAGACGAGTGTTCACAGCAGAGACACAATTGCAGTCACGTCTGTAAGAACAGTGTAGGAGGATATCAGTGTTCGTGTCATCCAGGATTTGTACTGTTGTCCGATGGCCAGTCGTGTGGAGATATCGACGAGTGTTCCCAAGAAAGACACAATTGCAGTCAAATCTGTAACAATACCGTAGAAGGATATCAGTGTTCGTGTTATCGAGGATATGCACTGTTGTCCGATGGACAATCGTGTGTAGATATAGAAGAGTGTTCCCAAGAAAGACACAATTGCAGTCAAGTCTGTAACAATACTGTAGGAGGATATCAGTGTTCGTGTCATCCAGGATTTGTATTGTTGTCCAATGGTCAGTCGTGTGTAGATATCGACGAGTGTTCCCAGCAGAGACACAATTGCAGTCAAGTATGTAAGAATACTGTAGGAGGATATCAGTGTTCGTGTCATCGAGGATTTATACTGTTGTCCGATGGCCAGTCGTGTGTAGATATAGACGAGTGTTCCCAAGAAAGACACAATTGCAGTCAAGTCTGTAACAATACTTTAGGAGGATATCAGTGTTCATGTTATCCAGGATTTATACTGTTGTCCGATGGCCACTCGTGTGTAGATATAGACGAGTGTTCCCAAGAAAGACACAATTGCAGTCAAGTCTGTAACAATACTGTAGGAGGATATCAGTGTTCGTGTCATCGAGGATTTATTCTGTTGTCCGATGGCCAGTCGTGTGTAGATATAGACGAGTGTTCACAGCAGAGACACAATTGCAGTCACGTCTGTAAGAACAGTGTAGGAGGATATCAGTGTTCGTGTCATCCAGGATTTGTACTGTTGTCCGATGGCCAGTCGTGTGGAGATATCGACGAGTGTTCCCAAGAAAGACACAATTGCAGTCAAATCTGTAACAATACCGTAGAAGGATATCAGTGTTCGTGTTATCGAGGATATGCACTGTTGTCCGATGGACAATCGTGTGTAGATATAGACGAGTGTTCCCAAGAAAGACACAATTGCAGTCAAGTATGTAAGAACAGTGTAGGAGGATATCATTGTTCATGTTATCGAGGATTTGTACTGTTGTCCGATGGCCTCTCGTGTGTAGATATCGACGAGTGTTCCCAGCAGAGAAACAATTGCAGTCAAGTCTGTAAGAATATTGTAGGAGGTTATCAATGTTCCTGTTATCCAGGATTTATGCTCTTGTCCGATGGCCAGTCGTGTGTAGATATAGAAGAGTGTTCCCAAGAAAGACACAATTGCAGTCATGTCTGTAACAATACTTTAGGAGGATATCAGTGTTCGTGTCATCCAGGATTTATACTGTTGTCGGATGGCCTCTCGTGTGTAGATATCGACGAGTGTTCCCAGCAGAGACTCAATTGCAGTCAAGTCTGTAACAATACTGTAGGAGGATATCAGTGTTCATGTTATCCAGGATTTATGCTGTTGTCCGATGGCCACTCGTGTGTAGATATAGACGAGTGTTCCCAAGAAATACACAATTGCAGTCAAGTCTGTAATAATACTGTAGGAGGATATCAGTGTTCGTGTCATCCAGGATTTGTACTGTTGTCCGATGGCCAGTCGTGTGTAGATATAGATGAGTGTTCCCAAGAAAGACACAATTGCAGTCAAGTCTGTAACAATACTGTAGGAGGATATCAGTGTTCGTGTCATCGAGGATTTATACTGTTGTCCGATGGCCAGTCGTGCGTAGATATCAACGAGTGTTCCCAGCAGAGTCACAATTGTAGTCAAGTCTGTAAGAACAGTGTTGGAGGATATCAGTGTTCGTGTCATCCAGGATTTGTACTGTTGTCCAATGGCCAGTCGTGTGTAGATATCGACGAGTGTTCCCATCAGAGAAACAATTGTAGTCAAGTCTGTAACAATACTGTAGGAGGTTATCAATGTTCCTGTTATCCAGGATTTATGCTCTTGTCCAATGGCCAGTCGTGTGTAGATATCGATGAGTGTTCCCAGGAAAGACACAATTGCAGTCAAGTCTGTAAGAATACTGTAGGAGGATATCAGTGTTCGTGTCATCGAGGTTTTGTACTTTTGTCCAATGGCCAGTCGTGCGTAGATATCGACGAGTGTTCCCAGGAAAGACACAATTGCAGTCAAGTTTGTAACAATACTGTAGGAGGATATCAGTGTTCGTGTCATCGAGGTTTTGTACTTTTGTCCGATGGCCAGTCGTGCGTAGATATCGACGAGTGCTCCCAGGAAAGACACAATTGCAGTCAAGTTTGTAACAATACTGTAGGAGGATATCAGTGTTTGTGTTATCCAGGATTTAAGGTGTTGTCCGATGGCCACTCGTGTGTAGATATAGACTTGTGTTCCCAAGAAAGACACAATTGCAGTCAAGTCTGTATGAATAATGAAGGAGGATATCACTGTTTGTGTATACCAGGATTTATACTGTTCTCCGATGGCAAATCGTGTGTAGATATCGACGAGTGTTCAACAACACATCACAACTGTTTGTATGGTTGTTTCAACTATTTTGGAGGATATATCTGTGGTGTGAAAGGCTTGATATACAATTCTGTTGTCATCATTTATGGAAGGAATGTGAGCTCAACAAGCATATTCGTCCAGTGGAGCAAGGTTCGTAATGTACGTGAATACCACGTTGGCTATTCGTTATTTATGAGGGACGAGCACCGTGTAAAGATCATCAGGATTAGCAATACAGCAAATGGTGTCATTATATCTTCTTTAAAACCTCTGACGATGTATAAATTCTTTGCGAGGGCGGTTTCTTCTGCCAAAGGGCCTGGTCCATGGAGCAATGGCTTTACGGTATCTACTGATGAACATCTTGTCCAAACACCTCCCGTCAATGTCAATGTTCTTCACATCAAGCCAATGCTATTATACCTCATATCGTGGAATAAAGTTGATTCACTTGTGGTTCGTGGGTTTGTTCTTGGCTACAGAGTTAAATTGGTTCATCTAGCTGGGACGGGCGATAGTAAACCACCGACCAAGATTATTTCCACACAAACTACGTCTATTGTAGTAGACGGACTGCGGCCTGACGCCCTCTATCTTATTAGTAATATCGTCGTTGTGCATTTACTAAATGTCTCAACAATGGAATCTGCAAGCAGAAAGAAAAACCAGTTTGCTATTGCTCAAAACGACACTTTGGTAGAGTTTGTCAACATTATTCATTAG

Transcript

gene00512.t1

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000019 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00041 all species →	fn3	Fibronectin type III domain	Domain	Interproscan
PF12662 all species →	cEGF	Complement Clr-like EGF-like	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000152 all species →	PTM	EGF-type aspartate/asparagine hydroxylation site	Interproscan
IPR000742 all species →	Domain	EGF-like domain	Interproscan
IPR001881 all species →	Domain	EGF-like calcium-binding domain	Interproscan
IPR009030 all species →	Homologous_superfamily	Growth factor receptor cysteine-rich domain superfamily	Interproscan
IPR018097 all species →	Conserved_site	EGF-like calcium-binding, conserved site	Interproscan
IPR003961 all species →	Domain	Fibronectin type III	Interproscan
IPR036116 all species →	Homologous_superfamily	Fibronectin type III superfamily	Interproscan
IPR026823 all species →	Domain	Complement Clr-like EGF domain	Interproscan
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR050751 all species →	Family	Extracellular matrix structural protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24034 all species →	EGF-LIKE DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for gene00512.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.