Gene detail

Detailed information of gene00899.t2 in Actinoscyphia liui

Genomic Location: chr1:12601036...12614322
NR annotation: XP_031575226.1, uncharacterized protein LOC116308859 [Actinia tenebrosa]
Species Actinoscyphia liui · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

gene00899.t2

ATGGGCCGTTATGCCGTTTCATGTCTGTTTGTTGCAGATCTATTAAGCTTGGAGAGTGGCTGTAGAAATGAAATTGTGCATTCCATTGGTAAAACGAGATGGACACAGCTGAATAGTCTTGGATTACCTTACGGTGTTCCAATACTTGAGAGTGTTCGTTGTGGTGGCGGCTGGTACCGTACACAACCTTTGGTCACTGCCTTTCCAGTGGCGTGGCTCAACGCTGAGTCCAAGGACGAATCTGATATATATTTCGAAACTGTCTCTCTTGATTCAGAGGATTTTAGTGAAGAAGATACATTGTGTGACAATAACAACGACATTGACGAAAGTGATAGATCAGACAACGATGCTGCCAACAATAGCACTGACAAAATCGGCAAAACAAACCAAAACCATGACGAAAGCGAAGACGTATCCAAAAACGAAGATTGCACAACCAATCAGAAAAATCCCAACTATCAACCGGCACTTCATCTTGGATGCTCCGTGCGGGAATCTGTGATAATGGTACCTATGTATCGAGGACAGGTATATAACGATAATGATAATGATAATCTGAAAAGAAAAGCTAGCGTATCTTCCAATGGTAGTCTTGAAGATGTTTCATCATTGACAAATTTTCCCATTCCGTCTTCAAAGCAGAGTGACACAATCTCAGATCATACATTGTCCACGCTTGGAACGACTGAAATTCAAGACAGTGGCTTCTTTGAAAGAGAAATAATGAAAGCATCACAATTCACTTTAACGAAAGAAGAATGGGAAGTTATCATGCCTCGTAATATCCCATCAGGAGGCCGATCCTTTTCCGGACCGTGGGCATCAATAATTGCAAAGCATCTGAAATCTCACAATCCATACTGCTCATTAGTATTTAAATATAACAGAGTGAAGAAAGTTGGCTCTAGAAAAAAGGCTACCCCTTTTTTCAGAGGTTCCGCTGTGTGCAAACACAGCGAATGCTCCATAGAAGTACAACTAACTATCACTTCTGAGAATGAAATTTTGAGGAAAGTGGATGTTGTTTGTAGTGGCCATCTAAAGCATCGAACCTCTTTTCCCCGTTCAAGGTTTGTGAAAGGAGAAGAACGGAAAGAAATGGGAAAAATGCTAACGAATTCTACACCCTCAAAAATGTACAACCAGCAACTAGCTTCGATTTCTGCTGACCATTTTGAATCAGGAAACAGAGATGGTTATGGATCCCCAAGCATCCTGCGAAAAATATCGTCTGAGGGCAGAAAAAACGATCAAATGAGCAGTGATGTCATCACCAGCCTTCTACTCTTGAAAAAAAAGTTACAAGAAGATGATGTCATTCGTGCAGAATCTGTGAGCCCAGAACACGCGAAAAAGAGGAAATTATGGGGATACATTCATTATATCTCTGTTGAGCCATTCACTCTGATGTTGTGGACGGAAGCTGGCCTTCGTTTGTGGCATGATCTTTGCGCCAAAACCAGGGTGCATTGGGATGCAACAGGGTCACTTGTTAGGAAAGTCTTTGCTGATAAGCCAGTATACTACTATGCTATAGTACTCCCACACCCTCTTAGAGGAGAAGCTCCACTGGCTGTCGCAGAGATGATTACTAACAGCCACTCAACTCCAAACCTTGTGCACTTCCTCGCATTGTTTCGTCACGCAGAGGCAGAAATATTTGGTTCGACTCATCTTTCCATACCGGTAACAATGGTAAGCGACTTAAGTTTCCCATTCATTCTCGCTTCCTTAAAGGAAATAAATGGGGAATCATTCTTGGATTTTCTCAAGCGGGCCTGGAGGATAGTGACACATAACACATCCATACGGGATCACGGAAAGATGTCACCACATGCTTGCACAAGCCATGTTATGCACGAAATGTTAAGGAAGTGTAAGCAAATATGTTCAAAACAACAAGTCTCGTTTCTTTTACACTCTTTTGCTGTTTTGGTTAACTGTATCACTCTCGATGAAGCAGAAGCAGCGGTGATAAATCTGCAAATCGTTGTAACGAGCCCCACTGTGAGCTCTCTCGCTTCATCTGCATATAAGTGGCTGAAGAATGCCATTAACAATCTTGGGTGCGCGGAATTGAGAGATTGTCTGCATTACCGAAAGGAGGACGAATTTCACGACCTTGAGATAGAAAACGAGGACACCAACTCATATGGCAGCGAAGAGACATATTATATACACTCGCCAAACAGTCCTTTCAAGATCCATTTTGACAATCTTGTTAAGTCGCAAAAGAATCAAATAATAAAAGCTTGTGAAAGTGCCATCAAGAAGAACCGGTACTTTATGCCTTCAGCCATTGAGCATATTCTGAAGTTTCGACTACCAACTCTTCCTTTGTGGTCATGTGTTTTAACGGGAAGTTCAAAAGTATGCAGTGACATTAGTACACCACAAACTGACGACGAAAATCAATGCATGGTGAAGGGTCAATTTTCAACCAAATCTACAAACGCAACTGTAGAAAACTGGTTTAAGCTTGTCAAGGTAGACGACTTTCTTAGAAAGGGACACTTCCGACCAGACGTCTTCGCACTCCAGCAGTACAATAACTTGCAAGGTCGTCAGCGAAGATTCACCGAAATATATTTATCAAACAATAAGTCTTCCAAACAGCCAAAGTACTCACGAGAACGACAAGTTCTTGCCGAGGAAAGATGGAGCAAGAGAAGGAAAATCTCTCCGAGTAAAACAAACAAAGTTGGACGATTTCAACAACCACCCGTGAAAGATCTTCCAGTGGATCTCCATAGCAATGTCGATACCAGTGATGTCGATAGCCCGCATAAAGCTGAAAATGATAATGCTACTGAAAGAGGACTGACCAGCCAAAATAATGGGTACCAGGATGGAAAATCCTCGAGGACTAAAAGAAAGCCTGTAAATTTAGCAGCCACAAAAACAGGAACAGTAAAGACTTCTGCACATAACAGAAAAATTCCCGCACCAACGTCAATCTTTAAGTCAGATGAAGGAATAAAAACATCGACACAGAAGAGCGCAGTGAAAAATAAAAGGAATAAGAAGACCAAGAAGACAACGAAAATGGCAACCGGATTGTCATTCAGGAAAACAATCACTCGTGGCAAAGGAATATGTAATTTGGGAAATACGTGTTATTTAAGTGCAACGCTTCAAATGTTATTGGGGGATTCAATGGTTGACAATGCTATTGATTACTTTAAAAAACAAGAAAATTCAAAGCCACGTGAACAGGATAGCCCATTTCAACACAGTAATTCTGACTGCGAAATTGTTCAGACTACGATTAATTCTGGCCAGGCGTTGGATGTGACAAAAACTTTAGAAGATCTGAAGAAACCTGGTGTAACGAGCAACAGCACTAATCCTGAAAAAGTTTTGGCTTTTTTGCGCAAGCAAGATGCGAGATTTTCAGTTGGAAGACAGCAAGATGCACAAGAATGTCTCAATATACTCTTAGATAGCTTTTTCTCGAAGAAAAACGCTTATGTATTACGTTACAAGCGGACAGGCACATCAAAGAGTGCTACCATTATAAAAGAAGAGAAAGTCGAAGCTGAAATTCAGAACCGCAAAACGAGAATTCTCGATGAAAGTATGAAAAGAAAGGTTATCAATGGTTACATGAAACTCATTGCAAAGGAAGCTAGGAAGGTAAAGATCCAGGTATTGACAATTGACAGCTTCCTGCTTCCAAGATTACAAAGATACAAGAAAGCATACATTACAGAATTTTGGTCGAACAAGTCCAGCAATGAATCGCGGCACTGGACACTTGTTGTAGTAGATGTTAACAAGAAAACTGTTTGCCATTTTGACTCGCTGACAGGTACTCCTACCAACAGCGTAATTGCAGCTGTCATGGATATCCTTTGCCATGCACATGCTGCCAAGAAAGGAGTACCGCTGGCCACAGAAGAATGGATTACCCTTAATCTTGACAAGGAAGAAATGCCATATTTCAGAGCTACTATAATCCAGGAATTGGCTTCTGGAGCTCTTTTTACTTAA

Transcript

gene00899.t2

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000547 (this species only)
Ubiquitin family	DUB\|ULP\|ULP · all ubiquitin genes in this species
Ubiquitin family	DUB\|USP\|USP · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00443 all species →	UCH	Ubiquitin carboxyl-terminal hydrolase	Family	Interproscan
PF02902 all species →	Peptidase_C48	Ulp1 protease family, C-terminal catalytic domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR018200 all species →	Conserved_site	Ubiquitin specific protease, conserved site	Interproscan
IPR001394 all species →	Domain	Peptidase C19, ubiquitin carboxyl-terminal hydrolase	Interproscan
IPR003653 all species →	Domain	Ulp1 protease family, C-terminal catalytic domain	Interproscan
IPR038765 all species →	Homologous_superfamily	Papain-like cysteine peptidase superfamily	Interproscan
IPR028889 all species →	Domain	Ubiquitin specific protease domain	Interproscan
IPR044635 all species →	Family	Ubiquitin carboxyl-terminal hydrolase 14-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43982 all species →	UBIQUITIN CARBOXYL-TERMINAL HYDROLASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004843 all species →	Molecular Function	cysteine-type deubiquitinase activity	Interproscan
GO:0016579 all species →	Biological Process	protein deubiquitination	Interproscan
GO:0006508 all species →	Biological Process	proteolysis	Interproscan
GO:0008234 all species →	Molecular Function	cysteine-type peptidase activity	Interproscan
GO:0043161 all species →	Biological Process	proteasome-mediated ubiquitin-dependent protein catabolic process	Interproscan
GO:0061136 all species →	Biological Process	regulation of proteasomal protein catabolic process	Interproscan
GO:0070628 all species →	Molecular Function	proteasome binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for gene00899.t2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.