Gene detail

Detailed information of gene00926.t1 in Actinoscyphia liui

Genomic Location: chr1:12956508...13002498
NR annotation: XP_031568634.1, uncharacterized protein LOC116303263 [Actinia tenebrosa]
Species Actinoscyphia liui · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

gene00926.t1

ATGTCCATCAGTGTACTAAGTACACAAAGTAGTTACTTTACTGATGGTCACATGGAAGATCTTGAAGACGCCATGACTGACAAGAGTGACAAATCAGACTTTAAGTTAACACAAGAAGAATTAGCACTGTATGACCTTGATAAAGATGGCAAGTTGAATCACAAAGAAATTGCAAGTTACATCCAAGATGTATTGGGATATAATCTTGAACCACAAACCAAAACCAAGAAAAAAATACGGCCGAGACAAAAGCCATTCTCTAAGAAGACATCTTCAAATAATGTGGAAGGAAAGTTTGGTGTGAAAGAAATAAGCATTGCAATAATGGTAGCTTTCTTGACTGTTATTGCAACCACCTGGTATTTGTACAAACACATTCATCATTCAAAGTCATACAAAGGGGTACCTATTGAAGATCTTCGTGTTGCCCGACTGCGCAAACTTGAAAGCCCTGCTGGAAAACCTGTAAAACCACAAAGGAATTTTAGTCAGGTTACTCAAGGAAAGAACCAAAGTCCCACCGAACAACTCGTTGATGATAGGAATTCATCATCGGATGATGATTTGCAAATGGTTTGTGGTAGTTTAGATACAGAGAAGAGAAAGCAATATGAAAAACCAAGAAAGAATGATTGTACTGACAAACCTTCCCATGGTGAAACAGCAAACTCTACACCAATGACAAGATCAACTATCTCCACAGCAAAGCTGATAAACACCAGCCAAAACAAAAGTACTGTCTCTGGTTGTAAACCCAAGCTAAAGGGAGATGACAAAGAAATATCATCAATATTCAAAGTACAGGAAGAAGAGTTGTCCTTTAGTCAAAGTGTTCAAATGGTCTTATCACAAGTCCTGGACTGTACAATAGAACTACAGAAGATATCACTGGATACATCTAAGTCCTTACACATAGCATCTAACTCAACACATGCAAAAATAGCTTTGGTAGCAGAAGAAATGCCAACCAACAAGGAAGATATGAAAAAGAAAGTTTCAAAAATAGTTTCCAAGAGGATGTGTTTAGAACTGGAACCAATGAAGTTTGCCCTCAAGTGTTATGATAGATGCACCCATACTCCTGACGTCTGCTTAAAGACTCATGACGTTTGGATAGCTCTAACTGATATTATCAAAGAAGACTGCACCAACACAGTTCTACATCAGTTAGTACAAGCCATTGCAAGCCCAACCTCAGCAGAAGAAGACTTGTGGTCTGAGTTCTGTAATTCAAGTAATTCTCAGGGATCGTCTTTCCACTTCCTGGGCTGTGTTGCTGGGTGGTCATCTGATGGTGCAGTTGTTTCAAATGAGTTTTTAACTAGGCTACTTGAACATGCCAAAGTGGACAGTCTTGCTAAACAAACATTTCTGAACATGATCTCCATATCAGGAAAACACATCCAATCTATACCAAGGTTGGATGAAGTTGCATTACACTGCAGTAGTCTGTTAAAAGGATTAGAAATCCTGATTAACCAGCCAATCATGATTGATTTCTTATCAGAACAACTGTTAAAGGAGGTTGAGGAAAGTTCCAAGGAAATGGGGAGTTATTTCCAAGAGAAGTCACTGTTTTCTTCATTTCTGTCTCTGACCACATTAGAAGCTAAAGTAACTGGCAAGTCTCGTGCATCACAGCCATTTAACAATCTTCCTCACTTCCCAACACCAGACCACAGTGATGTAGAACGTGTACAGAGTCAAATTCAAGATGCATTGCATTCCTGTCAAGCTGTTGTTCATAAAGTTATACGTCGAGTGTTGATTAAACACCAGCAAAGTGCTCTTGGTTGGTTGGCTGCAGTAGTGATGGATAATGATCTTCGATCAGCAGTTCTACTAAGTGAGGATCATGATGAAGCTATAGCTTGCAATGGTTACATGATGAATCTATGTCACGTGTTACTCCAACTGTGTGAACCATTTTTCGTGAGTAAAGGTGACAGTAAGATAGCTGATATCAGCCCACACTACTCAACATCAGATGCATGCCGACTGAACCACGACAATGAACGAACCTTGAGTGGTAGATGTATTGGCTCTGACGTTGAGGGCAAAGAAGTCCAAACAAACTTTATATTGCCAGAGAACTTAACAGGAAAGTTTGTTCTAAAAACTGAGATATTTCACATTACCCAGCGAGCACTTCATATCGGACTTGTAAACTCCATACAACACTATAACAGGCTTGTAAGGCAGTATTTGATATTGAAAGAAATGAACGAAGACAAAGACAAGGAAAAATATGTGCAACAGATTCTATCTCTGTTTGTGTTCCAGTGGAGGACTGTTCTTGAAGATAAACAGTTCATGAGACTGTGTTGTGAGTTTTACCTGACAAGTGCTGTATGGTTGTACAAAGCTTTAGAAAACTGTGCCCTGCCGACCTCTGCACAGGAAATATCTGAAGAAGACATGAAAGAGAAGCAGAAGGTTTTGTTGTCATCCATTCCTGAGTTCTACGTAAAAGATATGTGTACATGGTTTTACTATGTAGCAACTAACATTCCTCAAGAACTACGAGGACTTAAGATCATCCATTTTGTGGATTGCTGTACTGCTATAATGAGCAGTAAAGGTTTTGTTCCTGGACCTATGGTGTCTAGTAAGATTGTCACTGCTTTGTTAGCATTTGCTGATAGCTGCAACAGAAAGCAAACTCGTCATTCCCTTCTTGAGACAGCAAGCTGGGGAAGTGGTGTGGAGGGGGAATTAGCAGCTGCTGTTGTTGTTTCTCCTGTCATTCGAGAGAAATTAGCTTCAGCTCTCATTCAGACCTACACGTCTGTAGACATTGTGGAAGGGTTGGATGTCGACAAAGAAGAGTTTGACAAGTTTACTTCAAGGTAA

Transcript

gene00926.t1

CTTCATTCAAGCATGGATCCATGATTCAAGTGAAATCATTCAGTTTATCATCAGTTAATATGGCTTTACTATCATGCCAACTAGTGATTTGGATTCTTTTTATGTCCATCAGTGTACTAAGTACACAAAGTAGTTACTTTACTGATGGTCACATGGAAGATCTTGAAGACGCCATGACTGACAAGAGTGACAAATCAGACTTTAAGTTAACACAAGAAGAATTAGCACTGTATGACCTTGATAAAGATGGCAAGTTGAATCACAAAGAAATTGCAAGTTACATCCAAGATGTATTGGGATATAATCTTGAACCACAAACCAAAACCAAGAAAAAAATACGGCCGAGACAAAAGCCATTCTCTAAGAAGACATCTTCAAATAATGTGGAAGGAAAGTTTGGTGTGAAAGAAATAAGCATTGCAATAATGGTAGCTTTCTTGACTGTTATTGCAACCACCTGGTATTTGTACAAACACATTCATCATTCAAAGTCATACAAAGGGGTACCTATTGAAGATCTTCGTGTTGCCCGACTGCGCAAACTTGAAAGCCCTGCTGGAAAACCTGTAAAACCACAAAGGAATTTTAGTCAGGTTACTCAAGGAAAGAACCAAAGTCCCACCGAACAACTCGTTGATGATAGGAATTCATCATCGGATGATGATTTGCAAATGGTTTGTGGTAGTTTAGATACAGAGAAGAGAAAGCAATATGAAAAACCAAGAAAGAATGATTGTACTGACAAACCTTCCCATGGTGAAACAGCAAACTCTACACCAATGACAAGATCAACTATCTCCACAGCAAAGCTGATAAACACCAGCCAAAACAAAAGTACTGTCTCTGGTTGTAAACCCAAGCTAAAGGGAGATGACAAAGAAATATCATCAATATTCAAAGTACAGGAAGAAGAGTTGTCCTTTAGTCAAAGTGTTCAAATGGTCTTATCACAAGTCCTGGACTGTACAATAGAACTACAGAAGATATCACTGGATACATCTAAGTCCTTACACATAGCATCTAACTCAACACATGCAAAAATAGCTTTGGTAGCAGAAGAAATGCCAACCAACAAGGAAGATATGAAAAAGAAAGTTTCAAAAATAGTTTCCAAGAGGATGTGTTTAGAACTGGAACCAATGAAGTTTGCCCTCAAGTGTTATGATAGATGCACCCATACTCCTGACGTCTGCTTAAAGACTCATGACGTTTGGATAGCTCTAACTGATATTATCAAAGAAGACTGCACCAACACAGTTCTACATCAGTTAGTACAAGCCATTGCAAGCCCAACCTCAGCAGAAGAAGACTTGTGGTCTGAGTTCTGTAATTCAAGTAATTCTCAGGGATCGTCTTTCCACTTCCTGGGCTGTGTTGCTGGGTGGTCATCTGATGGTGCAGTTGTTTCAAATGAGTTTTTAACTAGGCTACTTGAACATGCCAAAGTGGACAGTCTTGCTAAACAAACATTTCTGAACATGATCTCCATATCAGGAAAACACATCCAATCTATACCAAGGTTGGATGAAGTTGCATTACACTGCAGTAGTCTGTTAAAAGGATTAGAAATCCTGATTAACCAGCCAATCATGATTGATTTCTTATCAGAACAACTGTTAAAGGAGGTTGAGGAAAGTTCCAAGGAAATGGGGAGTTATTTCCAAGAGAAGTCACTGTTTTCTTCATTTCTGTCTCTGACCACATTAGAAGCTAAAGTAACTGGCAAGTCTCGTGCATCACAGCCATTTAACAATCTTCCTCACTTCCCAACACCAGACCACAGTGATGTAGAACGTGTACAGAGTCAAATTCAAGATGCATTGCATTCCTGTCAAGCTGTTGTTCATAAAGTTATACGTCGAGTGTTGATTAAACACCAGCAAAGTGCTCTTGGTTGGTTGGCTGCAGTAGTGATGGATAATGATCTTCGATCAGCAGTTCTACTAAGTGAGGATCATGATGAAGCTATAGCTTGCAATGGTTACATGATGAATCTATGTCACGTGTTACTCCAACTGTGTGAACCATTTTTCGTGAGTAAAGGTGACAGTAAGATAGCTGATATCAGCCCACACTACTCAACATCAGATGCATGCCGACTGAACCACGACAATGAACGAACCTTGAGTGGTAGATGTATTGGCTCTGACGTTGAGGGCAAAGAAGTCCAAACAAACTTTATATTGCCAGAGAACTTAACAGGAAAGTTTGTTCTAAAAACTGAGATATTTCACATTACCCAGCGAGCACTTCATATCGGACTTGTAAACTCCATACAACACTATAACAGGCTTGTAAGGCAGTATTTGATATTGAAAGAAATGAACGAAGACAAAGACAAGGAAAAATATGTGCAACAGATTCTATCTCTGTTTGTGTTCCAGTGGAGGACTGTTCTTGAAGATAAACAGTTCATGAGACTGTGTTGTGAGTTTTACCTGACAAGTGCTGTATGGTTGTACAAAGCTTTAGAAAACTGTGCCCTGCCGACCTCTGCACAGGAAATATCTGAAGAAGACATGAAAGAGAAGCAGAAGGTTTTGTTGTCATCCATTCCTGAGTTCTACGTAAAAGATATGTGTACATGGTTTTACTATGTAGCAACTAACATTCCTCAAGAACTACGAGGACTTAAGATCATCCATTTTGTGGATTGCTGTACTGCTATAATGAGCAGTAAAGGTTTTGTTCCTGGACCTATGGTGTCTAGTAAGATTGTCACTGCTTTGTTAGCATTTGCTGATAGCTGCAACAGAAAGCAAACTCGTCATTCCCTTCTTGAGACAGCAAGCTGGGGAAGTGGTGTGGAGGGGGAATTAGCAGCTGCTGTTGTTGTTTCTCCTGTCATTCGAGAGAAATTAGCTTCAGCTCTCATTCAGACCTACACGTCTGTAGACATTGTGGAAGGGTTGGATGTCGACAAAGAAGAGTTTGACAAGTTTACTTCAAGGTAA

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0009035 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF10408 all species →	Ufd2P_core	Ubiquitin elongating factor core	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR018247 all species →	Binding_site	EF-Hand 1, calcium-binding site	Interproscan
IPR045132 all species →	Family	Ubiquitin conjugation factor E4	Interproscan
IPR019474 all species →	Domain	Ubiquitin conjugation factor E4, core	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13931 all species →	UBIQUITINATION FACTOR E4	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000151 all species →	Cellular Component	ubiquitin ligase complex	Interproscan
GO:0000209 all species →	Biological Process	protein polyubiquitination	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0030433 all species →	Biological Process	obsolete ubiquitin-dependent ERAD pathway	Interproscan
GO:0034450 all species →	Molecular Function	ubiquitin-ubiquitin ligase activity	Interproscan
GO:0036503 all species →	Biological Process	ERAD pathway	Interproscan
GO:0006511 all species →	Biological Process	ubiquitin-dependent protein catabolic process	Interproscan
GO:0016567 all species →	Biological Process	protein ubiquitination	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for gene00926.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.