Genomic Location: chr1:19721045...19724874
NR annotation: XP_020897731.1, cytochrome b-c1 complex subunit Rieske, mitochondrial [Exaiptasia diaphana]
Species Actinoscyphia liui · all data for this species · gene families
| CDS |
| gene01307.t1 |
| Transcript |
| gene01307.t1 |
| Protein |
| gene01307.t1 |
| UniProt accession | Description |
|---|---|
| Q9CR68 | Cytochrome b-c1 complex subunit Rieske, mitochondrial OS=Mus musculus OX=10090 GN=Uqcrfs1 PE=1 SV=1 |
| P20788 | Cytochrome b-c1 complex subunit Rieske, mitochondrial OS=Rattus norvegicus OX=10116 GN=Uqcrfs1 PE=1 SV=2 |
| P13272 | Cytochrome b-c1 complex subunit Rieske, mitochondrial OS=Bos taurus OX=9913 GN=UQCRFS1 PE=1 SV=3 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0008193 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00355 all species → | Rieske | Rieske [2Fe-2S] domain | Domain | Interproscan |
| PF02921 all species → | UCR_TM | Ubiquinol cytochrome reductase transmembrane region | Family | Interproscan |
| PF09165 all species → | Ubiq-Cytc-red_N | Ubiquinol-cytochrome c reductase 8 kDa, N-terminal | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR017941 all species → | Domain | Rieske [2Fe-2S] iron-sulphur domain | Interproscan |
| IPR037008 all species → | Homologous_superfamily | Cytochrome bc1 complex subunit Rieske, transmembrane domain superfamily | Interproscan |
| IPR014349 all species → | Family | Rieske iron-sulphur protein | Interproscan |
| IPR006317 all species → | Domain | Ubiquinol-cytochrome c reductase, iron-sulphur subunit | Interproscan |
| IPR036922 all species → | Homologous_superfamily | Rieske [2Fe-2S] iron-sulphur domain superfamily | Interproscan |
| IPR004192 all species → | Domain | Cytochrome b-c1 complex subunit Rieske, transmembrane domain | Interproscan |
| IPR015248 all species → | Domain | Ubiquinol-cytochrome c reductase iron-sulphur subunit, N-terminal | Interproscan |
| IPR005805 all species → | Domain | Rieske iron-sulphur protein, C-terminal | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR10134 all species → | CYTOCHROME B-C1 COMPLEX SUBUNIT RIESKE, MITOCHONDRIAL | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0051537 all species → | Molecular Function | 2 iron, 2 sulfur cluster binding | Interproscan |
| GO:0008121 all species → | Molecular Function | ubiquinol-cytochrome-c reductase activity | Interproscan |
| GO:0005750 all species → | Cellular Component | obsolete mitochondrial respiratory chain complex III | Interproscan |
| GO:0006122 all species → | Biological Process | mitochondrial electron transport, ubiquinol to cytochrome c | Interproscan |
| GO:0016491 all species → | Molecular Function | oxidoreductase activity | Interproscan |
| GO:0016020 all species → | Cellular Component | membrane | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K00411 | UQCRFS1, RIP1, petA; ubiquinol-cytochrome c reductase iron-sulfur subunit | EC:7.1.1.8 | Non-alcoholic fatty liver disease | ko04932 | deepkoala |
Genes whose expression across the transcriptome samples of Actinoscyphia liui tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Actinoscyphia liui, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
