Gene detail

Detailed information of gene01432.t1 in Actinoscyphia liui

Genomic Location: chr1:21564402...21578999
NR annotation: XP_031571273.1, uncharacterized protein LOC116305481 [Actinia tenebrosa]
Species abbreviation ALIUI · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

gene01432.t1

ATGTACCCCCAACGAAGAGAAGAAAACTCGACAACAAGGCTTCGGAGAAAGCCGATAAAAATACTTCAGAGGAAGTACAAATTGCTTCAGAAGAAGCAGAAAAAGCAAACTGAGAAAGCAAACTCGGACAGTAGGGATAATGCCGATATCCTAAGTCTATACGGCGGGGACATTGAAAGTGAGCAAGACCCAGACGACGAGGAGCTGGACAATGACGGCTTGTTGTCTGAAATTACTTCAGCACTCAGTACTGCAGATGATATTGGTCCCCCAGTGTCAGAAAAACTAGCCACGCTTGTCAATGACAAAATTGATACAGAATATAGTGTTGAAAAACGCAAAGAAATCCTACAAAAGTATAAGAAACCATGCAGAGAGTATTGCGTTAGTTATCCACCCAGAGAACTCGGCAGTCATATTACCACAGCAGCAACTTCTGTTTCTGGGGTTTCTCATAGATTCAGTGAAAATGAGAGCTTGTCCAACCCAAGGGCATCGTCTAGCTGTAGTGGTGTATTTGAGGTCACTTTTACATACTTCTCCAACCCAAAGGGTATGGATTTTAAAGGGGAAAACTGTGATCCTAAAGTACTATGGGTAAAAAGAACACCATGTGACCCGTATCTCCTTATTTGTGTGGCGTCACCACGCCCTTCACCTGCAGCAAATGACCAATGTTCCAAGAAGATATCCAAGACAGACGTAAACTCTTTCTCAATGAACGTTTTTATGTCAGCAACGTTCTCTGTTCTAAAGAAATCGTATGGTGCGTTTGTGGCAGCATGGGATGCCGATGTTGGCAACGATGATCTCATTGATACATTCTCCATCACTTTCACTAACAAATCCACCGTGAATGGAACAGTTCCGTCTTGGACAGAAACATCGGCCAAGGGAAAAAGATCCTCAAATAAATGTACCTTGAAATATAAATATCGAATATACTGTAATACTCACTATTACGGGCCTGGATGTGATAAGTACTGTAAATACACACATTCTGACATTGCTGGTCATTATAGATGTGCAAACAATGGAGAAAAAATATGTCTTACAAACTGGTTCATACCACAAACTAACTGTCTGAAATACTGTCGTCCAAGAAATGATACTGGTGGCCATTATAGGTGTGACTCTAATGGTGACAAGATATGCCATCTCAACTGGTATGGTCTAAACTGCACTGTGAACTGTATACCTAGGAATGGAACAGAAGGGCATTATAAATGCAACCCCTTGACCGGGGCGAAGGAGTGCTACCCAAATTGGTATGGTGAAAATTGTACCAAGATGTGTGTCCCTCATGACGATGACGTCAACGGTCACTATACGTGCAACTCAAATGGACAGCCAGTCTGCTATGTTGGTTGGTATGGCAACGGATGCTTTCGTTTTTGTGTCAGTCAGGATGATGACACATTGGGACATTATACATGTGATTCCAATGGGACTAAAGTGTGTAATATTAACTGGTACGGTATTAACTGCACGGTATATTGCAAGCCACGTCATGATAGCAGCGGGCATTATACGTGCAATAGCTCCACAGGAGAGAAAGTTTGTATGACGGGATGGTACGGAACGCAAACTGGTTGCAAATGTCAGCCAAAGAATGATACTCAATTTGGACATTATACTTGTGATAGAATAACTGGCGATAAAATATGCCTCGCATCATGGTACGGTCCGTATTGTAAGGTTTATTGCAACGAAAACCATGGCAACTATACGTGCAATGCTACCACTGGCGAAAAGATATGTAACGATCATTGGTACGGTATATTGTGCGACACTTATTGTAAGCCAGGAGCGGATGTCACAGGACATTATTCATGTAACACAACTACAGGAAATAGAATCTGCTCAACTGACTGGTATGGATCTTCCTGTAAGGTATTTTGCGATGCAAACTTAGGCAACTATACCTGCGACAATTCAACAGGAGAGAAAATTTGTCACGTTGATTGGTATGGAAAATTGTGTGATACTTACTGTAGACCTCGTGACGATGAAACAGGTCATTATAAATGTAACGTCACTAATGGTGCTAAAATTTGCCTACCAAACTGGTATGAAAAAATGTGTATAGTTTACTGCAAAGAACAAAACGACCCAAATGGAAACTACAAATGCGATCCATCAACAGGGTCCAAAGTATGTCATCCCAACTGGTATGGTAAAAACTGTACTATGTTCTGTGAACCGAAGAATGGAGTGGAAGGACATTACAACTGCAGTGATGAAGGATCTAAAGTATGTCATCCCAACTGGTATGGTAAGAACTGTACTGCGTTCTGTGAACTGAAGAATGGAGTGGAAGGACATTACAACTGCAGTGATGAAGGATCCATAGTATGTCATCCCAACTGGTATGGTAAGAACTGTACTGTGTTGTGTACACCTAAAGATGGATTGGAAGGACATTACAACTGCAGTGATGAAGGATCCATAGTATGTCATCCCAACTGGTATGGTAAGAACTGTACTGTGTTCTGTACACCTAAAGATGGATTGGAAGGACATTACAACTGCAGTGATGAAGGATCCATAGTATGTCATCCCAACTGGTATGGTAAGAACTGTACTGTGTTCTGTACATCTAAAGATGGAGTGGAAGGACATTACAATTGCAGTGATGAAGGATCTAAAATATGTCATCCCAACTGGTATGGTAAGAACTGTACTGTGTTCTGTACACCTAAAGATGGAGTGGAAGTACATTACAATTGCAGTGATAAAGGATCCAAAGTATGTCATCTCAACTGGTATGGTAAGAACTGTACTGTGTTCTGTGCACCTAAAGATGGAGTGGAAGGACATTACAACTGCACTGATGAAGGATCCATAGTATGTCATCCCAACTGGTATGGTAAGAACTGTACTGCGTTTTGTGAACCGAAGAATGGAGTGGAAGGACATTACAACTGTAGTGATGAAGGATCCAAAATATGTCATCCGAACTGGTATGGTAAGAACTGTACTGTGTTCTGTACACCTAAAGATGGAGTGGAAGGACATTACAACTGCAGTAATGAAGGATCCATAGTATGTCATCCCAACTGGTATGGAAATAACTGTACTGTGTTCTGTGAACCGAAGAATGGAGTGGAAGGACATTACAACTGCAGTGATGAAGGATCCATAGTATGTCATCTCAACTGGTATGGAAAGAACTGTACTGTGTTCTGTGCACCTAAAGATGGAGTGGAAGGACATTACAACTGCACTGATGAAGGATCCATAGTATGTCATCCCAACTGGTATGGTAAGAACTGTACTGTGTTCTGTGAACCGAAGAATGGAGTGGAAGGACATTACAACTGCAGTGATGAAGGATCCATAGTATGTCATCTCAAATGGTATGGTAAGAACTGTACTGCGTTTTGTGAACCGAAGAATGGAGTGGAAGGACATTACAACTGTAGTGATGAAGGATCCAAAGTATGTCATCCCAACTGGTATGGTAAGAACTGTACTGTGTTCTGTACACCTAAATATGGAGTGGAAGGACATTACAACTGCAGTGATGAAGGATCCAAAGTATGCCATCCCAACTGGTATGGAAAGAACTGTACTGCGTTTTGTGAACCGAAGAATGGAGTGGAAGGACATTACAACTGTAGTGATGAAGGATCCAAAATATGTCATCCGAACTGGTATGGTAAGAACTGTACTGTGTTCTGTACACCTAAAGATGGAGTGGAAGGACATTACAACTGCAGTGATGAAGGATCCATAGTATGTCATCCCAACTGGTATGGAAAGAACTGTACTGTGTTCTGTGAACCGAAGAATGGAGTGGAAGGACATTACAACTGCAGTGATGAAGGATCCATAGTATGTCATCTCAACTGGTATGAAAAGAACTGTACTGTGTTCTGTGCACCTAAATATGGAGTGGAAGGACATTACAACTGCACTGATGAAGGATCCACAGTATGTCATCCCAACTGGTATGGTAAGAACTGTACTGTGTTCTGTGAACCGAAGAATGGAGTGGAAGGACATTACAACTGCAGTGATGAAGGATCCATAGTATGTCATCCCAAATGGTATGGTAAGAACTGTACTGTGTTCTGTGAACCGAAGAATGGAGTGGAAGGACATTACAATTGCAGTGATGAAGGATCTAAAATATGTCATCCCCACTGGTATGGTAAAAACTGTACTGTGTTCTGTACACCTAAATATGGAGTGGAAGGACATTACAATTGCAGTGATAAAGGATCCAAAGTATGTCATCCCAACTGGTATGGTAAGAACTGTACTGTGTTCTGTGCACCTAAAGATGGAGTGGAAGGACATTACAACTGCACTGATGAAGGATCCATAGTATGTCATCCCAACTGGTATGGTAAGAACTGTACTGTGTTCTGTGAACCGAAGAATGGAGTGGAAGGACATTACAACTGCAGTGATGAAGGATCCATAGTATGTCATCTCAAATGGTATGGTAAGAACTGTACTGCGTTTTGTGAACCGAAGAATGGAGTGGAAGGACATTACAACTGTAGTGATGAAGGATCCAAAGTATGTCATCCCAACTGGTATGGTAAGAACTGTACTGTGTTCTGTACACCTAAATATGGAGTGGAAGGACATTACAACTGCAGTGATGAAGGATCCAAAGTATGCCATCCCAACTGGTATGGAAAGAACTGTACTGCGTTTTGTGAACCGAAGAATGGAGTGGAAGGACATTACAACTGTAGTGATGAAGGATCCAAAATATGTCATCCGAACTGGTATGGTAAGAACTGTACTGTGTTCTGTACACCTAAAGATGGAGTGGAAGGACATTACAACTGCAGTAATGAAGGATCCATAGTATGTCATCCCAACTGGTATGGAAATAACTGTACTGTGTTCTGTGAACCGAAGAATGGAGTGGAAGGACATTACAACTGCAGTGATGAAGGATCCATAGTATGTCATCTCAACTGGTATGGAAAGAACTGTACTGTGTTCTGTGCACCTAAATATGGAGTGGAAGGACATTACAACTGCACTGATGAAGGATCCATAGTATGTCATCCCAACTGGTATGGTAAGAACTGTACTGTGTTCTGTGAACCGAAGAATGGAGTGGAAGGACATTACAACTGCACTGATGAAGGATCCATAGTATGTCATCCCAAATGGTATGGAAAGAACTGTACTGCGTTTTGTGAACCGAAGAATGTAGTGGAAGGACATTACAACTGTAGTGATGAAGGATCCATAGTATGTCATCCCAACTGGTATGGTAAGAACTGTACTGTGTTCTGTACACCTAAATATGGAGTGGAAGGACATTACAACTGCAGCGATAAAGGATCCAAAGTATGTCATCCCAACTGGTATGGTAAGAACTGTACTGTGTTCTGTACACCTAAATATGGAGTGGAAGGACATTACAACTGTAGTGATGAAGGATCCAAAGTATGTCATCCCAACTGGTATGGTAAGAACTGTAATGTGTCCTGTGCACCTAAAGATGGATTGGAAGGACATTACAACTGCAGTGATGAAGGATCTAAAATATGTCATCCCAACTGGTATGGTAAAAACTGTACTGTGTTCTGTACACCTAAAGAGGGAGTGGAAGGACATTACAAGTGCAGTGATGAAGGATCCAAAGTATGTCATCCCAACTGGTATGGTAAGAACTGTACTGCGTTTTGTGAACCGAAGAATGGAGTGGAAGGACATTACAACTGTAGTGATGAAGGATCCAAAGTATGTCATCCCAACTGGTATGGAAAGAACTGTAATGTGTCCTGTGCACCTAAAGATAGATTGGAAGGACATTACAACTGCAGTGATGAAGGATCTAAAATATGTCATCCCAACTGGTATGGTAAAAACTGTACTGTGTTCTGTACACCTAAAGATAGAGTGGAAGGACATTACAATTGCAGTGATGAAGGATCCAAAGTATGTCATCCCAACTGGTATGGTAAGAACTGTACTGTGTTCTGTACACCTAAAGGTGGCATGGAAGGACATTACAATTGCAGTGATGAAGGATCCAAAGAATGTCATCGCAACTGGTATGGAAGGAATTGTTTAACGTTTTGTAAAAAAGCGAACGATGTGTATGGTCATTACTCTTGTAATACTACATCTGGCGAGAAGATATGTCGCTTAGGATGGTATGGCGCAAACTGTACCTTATCGAATCTGTCTTCCTCACCATCTGTTATGTCTGTGTTTGAAACGTCTGCACCAGCGATACAGTTTTCTACCTCATCGCTGGAAATATCAATTGCATCGTTGTCGTCGATCTCCAAGGGACGACTAAGTTCTGCAGTTATCACTCGATCCCTATCCTCGATTCATGCAACGGTCCCTTCAACTGTTGAGATGCCATTTAGTTCTTGTGGAGTTAGTCTCTCGCAGTTATCAACTCTCACAATATCACCAAGTTCTTCTGTCGTCAGTCGGTCCCTGTCTTCAACTATTGTGCCATTTCTATCTTCCTCTGCTCACGTTAGTTCCCAGTCGTCATCATTTATTTCTTACACACAGTTACCACCAGTGTCTTCTAGTAACAGTTTGTATTTACAAACGTCTAGCGTTGCATCACAGAGTTCTTCGTCCACCATTTATTCACATTCATCTAGTTTTGTGGCATCAGTACGTTCTTCGGATTCCATTCAGCCTTTTTCGTCAACAAGTGTAAGATCTCCGAATTTATCCATCGTTAAACCGTCCTCGTCGTCCTTTTATAAAGTATTCCCAAGTTCCTCTAGTTCTTTTCGGTCTTTAACTTATTTTAGTACCACGCCTACACTTATAACTTCCCGCTCTCCTCCAAACACTATAGAAGCATCCCGTGTATTCTCCAGTACAGCATCTCCAACTGTTTCTGTTACTATACCAAGCAATGACACTGCACCAGGAGTAGTGGTCCCTCCCAGCTGGAGTGAGAACGCGAAGGAGTGGCTTCTTAAAACATGGAGGAAACCTGTAGGAAAGGCTGCTGTTGGCCTTATTCTCTTGTTTTTGATTGTCCTGATTGTTGCCATTCTTCTAGTTCGACGACGCAGAAGTAAGAAAATACAACCCAAGAAGGCAGGAAATGGAACAAATGGTTTTAGTAGCATAGACATGCCTGCTTGTCTTCTTCTGGATGCTGCATATGTTGAAGAAATGGAAGATATGGCGCCATCAAAAACAAAAAAACGTACACAGCCGCCAGTGGCAGATTCAATTTTTGGTGCAAGTAACCCGTTTTTTGATGACAAAACTCGTTTTGTAAACCTCTCGGATGGTTATGAAGATGATGATATTATGGAAACAGAAAAACCAAGGACCTCCAGTAAAACTGACCAATCAGAACCAAAGGCGCGATCCATCAGTAACCCCTTATATTCTGACGACTCCAAGTACTATAAACTCAAGTCCGAGTACGAAACCAACGATGGAAGAAGTCTAAACGAGTCAGACATTTGA

Transcript

gene01432.t1

Protein

gene01432.t1

MYPQRREENSTTRLRRKPIKILQRKYKLLQKKQKKQTEKANSDSRDNADILSLYGGDIESEQDPDDEELDNDGLLSEITSALSTADDIGPPVSEKLATLVNDKIDTEYSVEKRKEILQKYKKPCREYCVSYPPRELGSHITTAATSVSGVSHRFSENESLSNPRASSSCSGVFEVTFTYFSNPKGMDFKGENCDPKVLWVKRTPCDPYLLICVASPRPSPAANDQCSKKISKTDVNSFSMNVFMSATFSVLKKSYGAFVAAWDADVGNDDLIDTFSITFTNKSTVNGTVPSWTETSAKGKRSSNKCTLKYKYRIYCNTHYYGPGCDKYCKYTHSDIAGHYRCANNGEKICLTNWFIPQTNCLKYCRPRNDTGGHYRCDSNGDKICHLNWYGLNCTVNCIPRNGTEGHYKCNPLTGAKECYPNWYGENCTKMCVPHDDDVNGHYTCNSNGQPVCYVGWYGNGCFRFCVSQDDDTLGHYTCDSNGTKVCNINWYGINCTVYCKPRHDSSGHYTCNSSTGEKVCMTGWYGTQTGCKCQPKNDTQFGHYTCDRITGDKICLASWYGPYCKVYCNENHGNYTCNATTGEKICNDHWYGILCDTYCKPGADVTGHYSCNTTTGNRICSTDWYGSSCKVFCDANLGNYTCDNSTGEKICHVDWYGKLCDTYCRPRDDETGHYKCNVTNGAKICLPNWYEKMCIVYCKEQNDPNGNYKCDPSTGSKVCHPNWYGKNCTMFCEPKNGVEGHYNCSDEGSKVCHPNWYGKNCTAFCELKNGVEGHYNCSDEGSIVCHPNWYGKNCTVLCTPKDGLEGHYNCSDEGSIVCHPNWYGKNCTVFCTPKDGLEGHYNCSDEGSIVCHPNWYGKNCTVFCTSKDGVEGHYNCSDEGSKICHPNWYGKNCTVFCTPKDGVEVHYNCSDKGSKVCHLNWYGKNCTVFCAPKDGVEGHYNCTDEGSIVCHPNWYGKNCTAFCEPKNGVEGHYNCSDEGSKICHPNWYGKNCTVFCTPKDGVEGHYNCSNEGSIVCHPNWYGNNCTVFCEPKNGVEGHYNCSDEGSIVCHLNWYGKNCTVFCAPKDGVEGHYNCTDEGSIVCHPNWYGKNCTVFCEPKNGVEGHYNCSDEGSIVCHLKWYGKNCTAFCEPKNGVEGHYNCSDEGSKVCHPNWYGKNCTVFCTPKYGVEGHYNCSDEGSKVCHPNWYGKNCTAFCEPKNGVEGHYNCSDEGSKICHPNWYGKNCTVFCTPKDGVEGHYNCSDEGSIVCHPNWYGKNCTVFCEPKNGVEGHYNCSDEGSIVCHLNWYEKNCTVFCAPKYGVEGHYNCTDEGSTVCHPNWYGKNCTVFCEPKNGVEGHYNCSDEGSIVCHPKWYGKNCTVFCEPKNGVEGHYNCSDEGSKICHPHWYGKNCTVFCTPKYGVEGHYNCSDKGSKVCHPNWYGKNCTVFCAPKDGVEGHYNCTDEGSIVCHPNWYGKNCTVFCEPKNGVEGHYNCSDEGSIVCHLKWYGKNCTAFCEPKNGVEGHYNCSDEGSKVCHPNWYGKNCTVFCTPKYGVEGHYNCSDEGSKVCHPNWYGKNCTAFCEPKNGVEGHYNCSDEGSKICHPNWYGKNCTVFCTPKDGVEGHYNCSNEGSIVCHPNWYGNNCTVFCEPKNGVEGHYNCSDEGSIVCHLNWYGKNCTVFCAPKYGVEGHYNCTDEGSIVCHPNWYGKNCTVFCEPKNGVEGHYNCTDEGSIVCHPKWYGKNCTAFCEPKNVVEGHYNCSDEGSIVCHPNWYGKNCTVFCTPKYGVEGHYNCSDKGSKVCHPNWYGKNCTVFCTPKYGVEGHYNCSDEGSKVCHPNWYGKNCNVSCAPKDGLEGHYNCSDEGSKICHPNWYGKNCTVFCTPKEGVEGHYKCSDEGSKVCHPNWYGKNCTAFCEPKNGVEGHYNCSDEGSKVCHPNWYGKNCNVSCAPKDRLEGHYNCSDEGSKICHPNWYGKNCTVFCTPKDRVEGHYNCSDEGSKVCHPNWYGKNCTVFCTPKGGMEGHYNCSDEGSKECHRNWYGRNCLTFCKKANDVYGHYSCNTTSGEKICRLGWYGANCTLSNLSSSPSVMSVFETSAPAIQFSTSSLEISIASLSSISKGRLSSAVITRSLSSIHATVPSTVEMPFSSCGVSLSQLSTLTISPSSSVVSRSLSSTIVPFLSSSAHVSSQSSSFISYTQLPPVSSSNSLYLQTSSVASQSSSSTIYSHSSSFVASVRSSDSIQPFSSTSVRSPNLSIVKPSSSSFYKVFPSSSSSFRSLTYFSTTPTLITSRSPPNTIEASRVFSSTASPTVSVTIPSNDTAPGVVVPPSWSENAKEWLLKTWRKPVGKAAVGLILLFLIVLIVAILLVRRRRSKKIQPKKAGNGTNGFSSIDMPACLLLDAAYVEEMEDMAPSKTKKRTQPPVADSIFGASNPFFDDKTRFVNLSDGYEDDDIMETEKPRTSSKTDQSEPKARSISNPLYSDDSKYYKLKSEYETNDGRSLNESDI

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9QXX0	Protein jagged-1 OS=Mus musculus OX=10090 GN=Jag1 PE=1 SV=1
Q63722	Protein jagged-1 OS=Rattus norvegicus OX=10116 GN=Jag1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0017241 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01414 all species →	DSL	Delta serrate ligand	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001774 all species →	Domain	Delta/Serrate/lag-2 (DSL) protein	Interproscan
IPR042635 all species →	Family	MEGF10/SREC1/2-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24043 all species →	SCAVENGER RECEPTOR CLASS F	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0007154 all species →	Biological Process	cell communication	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0005044 all species →	Molecular Function	scavenger receptor activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K02599	NOTCH1; Notch 1	-	Endocrine resistance	ko01522	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.