Gene detail

Detailed information of gene01575.t1 in Actinoscyphia liui

Genomic Location: chr1:24503776...24517246
NR annotation: XP_031563559.1, F-box/WD repeat-containing protein 1A-like [Actinia tenebrosa]
Species Actinoscyphia liui · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

gene01575.t1

ATGACATCTTTCCATGACAAACTTGATCTCATTTTGAAAGACTTTGGGGGTTTTACTCGCGAACAACAGAACGAAGCCTTGCAAAGCTTGCTTCTAAAATGTCAGCCTCTTCAGCTACGGATCCTGTACTCGGAGCTGAAGCCTCTGCTTGCTGTAGACTTTGCAGCAAATTTACCCAAGGAAATCACAGAGCGAATATTTTCTTTCTTGTCAGCTGACACCTTGTGCAAGGTTGCACAGTGTAGTAAATTGTGGAGAGAACGGGCCAATAACAACCCGACCTGGCACAAGTTTTGCCTCCATAAAGGATGGGGCAAGTTTGGTGAAGATGGTACTCTTTCTCTACAATCATTAACAATAGCAGTAAGGCCACAATCTCCATCTAAAGTCCAGTCCTTACCAATGTTTCATTTCACTGAGAATGACAGCACCCTGAAGCCTGCGACATGCCGATGGAAGAGTATTTACATCAGAGCATATTATTTACAGCAGAATTGGCATTGTGGGAGGTACACTATTGCTCCTATTCTAAGAGGCCATAAGGAACCTGTCACTGACATAGCCTGTGATGGCAAAGTATTGGTGTCTTCTGGATCAGACAATACTGTAAGGGTGTGGGACCTGCATGAGTATCATTGTGTTCATGTCCTCAGTACTCCTCATACTGACTCAGTACGGTGTGTACAGCTAAAGAATTCCCTATGCGTGTCTGGTTGTTCTGATGGTGTTGTAAGAATATTTGATGTTAAAACAGGACAATGTCTAAGGTCCTTGCAAGGTCAGTCTGGAGGTATTGAGCACCTTTGTTTTGATGGAAATATTATCGTTGCTGCTACCTCAGAAAGAACTCTACGTGTATGGAATGCAAAGACTGGCAAAGTGTTGCACACACTTACTGGCCATACTGATGAAATACTGTTCATGACGATGCGTGATGGTCACGTGGTTACTACATCATGGGATGAGACTATTCGTTTGTGGGACGTCAAGTCTGGTGTTTGTCTATTAACCTTACGAGGCCATAGCGAAGCTGTCTATTGCTGTCAGTTTGATGAAAGACGAATCGTCAGTGGAGGGGGCGACAACCTCATTATAATATGGAATGCAAAAACCGCTGATATCGAAGCCAAGTTGGTCGGACACACAGGCGATGTGTACTGCCTGACGTACAACAACGACATCATTGCGTCTGGTTCGTCTGACAGCACGGTACGACTGTGGAGCTTTGAAGGTCGTCTGCTTCATACGTTACACGAACACATAGGTATAGTACGATGTCTACACCTAACAGTAGATAGGATAGTATCTGGTGGTGATAGAAAGAGGATTGCCATCTGGGATACCAAGACTGGCAAACTTCTCAACGTTGTCCACCGCAACCCTACCTTACTCCATTTAATGTGGGCGGACGAAACAAGGCTCATCACCGCGTCACCTGATAAACCTGGAACCATTACCATCATTAATTACTGGTGATAGCGTTGCTATGGAAATGGTTACTTAGCAACAACCTAGGAACTGGAAAGTCAAAATGGAGTGATGTAAGGCGATTCTCTTGCTTTGCAATTGCAAGGAAAATGGTTAAATAGCATCATTGTTTGCCATGAAATATCAGATTAAAGATAATGCTGTAAAATGGTAGCATTGCTAAGCAACTGTTACTTAGTAACAATGTGTGCCTTGGCAACGGAAAAAGCATCCAACGAATTGTATCAACTGCGAAATGGATGTCAAGTAACAGTGTGTTTCTAGGCAACGGGACAAACGTCATACCAAATGGAGTGCCGTGCGTTGCTATGGAAATGATAGCAAAATCTTGCCTTATGGCGGCATTGTATTTGCTGCTGGGGCTTTTCAAAAACTACCCCAAGAGAATTGATTGTCATAAGAAGTAATGAGTACTATATTGCTCCAAAGGGTGTGGCACCACCAACCGGTCATAATGAGAATCACTGCCATGTTCTCTTGGTTCTTTCTCAGTCATGTTTTCCAGTTGTGTTTGAGTTTTTACTGAATGCAGACCGGCATCACTATGGGCTCTTTCTCCGTGTACCGGCACAGTATATGTCACAATTCAATGGAAACAAAAGGCAAAGACAATGGTGTCAATGCATTCTGGTACGCAGAGAAGGACCCCTGGTATTCATTTAAAATGCAGGTTTTCAGTACAATCCTCTTGAGGAAATGTTTTTAAAATAGTTTCATAGCAAAACATCAAAGCCATGACCCACTACAAACAAACACTTATGTCTCAAGAGAACTGAAAATGACACAGGGAAAAATTGATAAAACACATAAACTATTCATGTGTTTTAGAAATTAATGTTTGTTGTCATATTCCCACTGTGAATCAATGGGAATCGGTAGTTCGGAAAAACCATTCATGTGTTTTAGACCGCATGTTTCCCTGTGTGAATCTGGAGAGGCAAGCAAATAATGTCTATTCTCTTGGCCCCGG

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0009195 (this species only)
Ubiquitin family	UBD\|Other\|Beta-prp · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|CDC20 · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|DWD · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00400 all species →	WD40	WD domain, G-beta repeat	Repeat	Interproscan
PF12937 all species →	F-box-like	F-box-like	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001680 all species →	Repeat	WD40 repeat	Interproscan
IPR001810 all species →	Domain	F-box domain	Interproscan
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR019775 all species →	Conserved_site	WD40 repeat, conserved site	Interproscan
IPR036047 all species →	Homologous_superfamily	F-box-like domain superfamily	Interproscan
IPR036322 all species →	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR020472 all species →	Repeat	G-protein beta WD-40 repeat	Interproscan
IPR018391 all species →	Repeat	Pyrrolo-quinoline quinone beta-propeller repeat	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22847 all species →	WD40 REPEAT PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K10260	FBXW7, SEL10; F-box and WD-40 domain protein 7	-	Ubiquitin system	ko04121	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.