Gene detail

Detailed information of gene01643.t1 in Actinoscyphia liui

Genomic Location: chr1:26117935...26122236
NR annotation: CAB3996983.1, Transposon Ty3-G Gag-Pol poly [Paramuricea clavata]
Species Actinoscyphia liui · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

gene01643.t1

ATGACTTCACAAATACCGATTCCCGAAAAGCTAGATTCAAAGAAACCAGAGGATTGGAAGAAATGGATCGACCGCTTTCGTTGCTACAGCATCGCGTCAGATCTCGTATCGAAGTCTGCCACTGTACAAATCAATACTCTTGTTTATGCGATGGGTGGAAATGCTCACGAAACACTGGAAAGTTTTCACGTTTCTACGACTGACAAGGACGAGTGGACCTTTGAGAAGATCGTGGAGCGATTCAATCGGCATTTCATTGGAAGAACAAACACGATCTTCGAGAGGGCACGATTCAACCGGAGAGTACAGCGAGAGAACGAGCCAGTCATCGATTTCATCGATGACTTGTTTAAATTAGCTCAGACCTGCAACTTTGGAGAGCTAACAAACGAACTAATCCGCGATCGGATTGTAGTTGGAATTCGCAATAATGATCTTTCACGTAAATTGATGCAAGACGAGAAACTTGATCTCGACAAAGCTGTCAAGCAAGTAAAGGCATCGGAAATGATAAAGGAACATCACGAAATCTTGAAAGGCGACAATGAAGAAGCTAAGATCTCCTTTGTGAAACGGGACAATCCAACATGGAGAAAACCGAAACCAAGTACAACACTAGAAAAGGAGAAGAAATGCTTTAACTGTGGTGGGAAATTCCACAGACGCCAGGAATGTCCGGCGAGAAATGCCACGTGTTTCAAGTGTCAACAGAAAGGTCACTTTAGATCAGTTTGCAGAAGTTCGTCTGTCAATTACGTTGAAGACGATCAAGAAGAAGAGTACTCCGAAGCATTCCTTGGAAGTGTAGACTCCAATGACTCCAAACAGAAATGGAAACTAATGGTAAAGATTGGCCAAACAGATGTGGAGTTTAAAATTGACACGGGAGCGGACGTGACAGTCATTCCGGCATCTGTTTACAATCAAAGCGGATTGGATAACATTACTAAGACAACGAAAAAGCTCTTTGGACCCGGTCAAACTGAACTGAACGTCATAGGACGTTTGATGACAACGCTTGAAAGCAGCAAGACAGCGATAAAAGATGAAGTGTATGTTGTTAATGACCTCAAGGAACCGCTTCTTGGACGGCCAGAAAAAGAGAAATTTAATCTTCTTAAAAAGATCAACAATGTCACGCAAACCGGAAGTGTAACATACGGAGAGGAAATAAAGGAAAAATACCCCAAATTGTTCAGTGGTCTAGGCACAATGGACGGTGAATTTTCCATTAAACTTGTGCCGGGAGCCAAACCGTTTGCTCTAACTACACCACGGCGTGTTGCCCTACCACTTATGGGAAAGGTTAAAGAGGAACTAGCTCGAATGGAAAACCTAGAACTGAGTCATTACAAAGATACCGGAAGGTGTAACAACGGAGTGGTGTGCAGGTACTTTGAAATTGCACCTCTGAGGAACGAGACGTCTGAAGATGTTGTTGAACACCTCAAGTCAATTTTTGCCCGCCATGGGATCCCAGCGACGGTGGTCTCAGACAATGGCCCGCAGTATTCAGTTGCATCTTTTTCTAAGTTCTCTGAAGAATGGGGGTTCACCCATTTGACGAGTAGTCCACGATACCCACAAAGCAATGGAGAAGCCGAACGGGCAGTACAAACAGTAAAGAATTTACTAAAGAAGTCTGAGGATCCTTACCTAGCAATGCTGTCGTACAGAACCACCCCCCTGCACAATGGGGTAAGTCCCGCCCAACTATTGATGGGGAGGAAACTTAGGACTACCTTGCCTGTTACCCCAGACCAACTAAAGCCATCACGGACAGACCTCGCAGACCTTCAAGCAAAGGAGGAAGTCTACAAGAAACAACAGAGTCAAAACTTCAACAACTATCACAAAGCAAGAAACCTTCCTGAACTCCAGCCTGGAACTAAAGTATGGCTAACGGATCAAAGGAAAGAAGGGATGGTAGTCAAGAAAGCTGATGAGCCTCGATCATACATTGTCAAAACAGAAAGCTCAACTAGTGGGATAAGGAGGAACAGGAGACATCTGGTGGCAAGCCCTAGCGACACCTCAAGTTTGACCCCATCTAATGACATGTATCAACAACCAGGCTTAGATGAGGAACATTCAGTTCCTGACTCTCCAAGCTGTTCTACGAGTACTACTCCTATAACCACAAGATCGGGCAGAGTAGTGGTACCACCCAAAAGACTTGATCTATAG

Transcript

gene01643.t1

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000696 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00665 all species →	rve	Integrase core domain	Domain	Interproscan
PF13650 all species →	Asp_protease_2	Aspartyl protease	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036397 all species →	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR001584 all species →	Domain	Integrase, catalytic core	Interproscan
IPR012337 all species →	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR036875 all species →	Homologous_superfamily	Zinc finger, CCHC-type superfamily	Interproscan
IPR021109 all species →	Homologous_superfamily	Aspartic peptidase domain superfamily	Interproscan
IPR001995 all species →	Domain	Peptidase A2A, retrovirus, catalytic	Interproscan
IPR050951 all species →	Family	Retrovirus-related Pol polyprotein	Interproscan
IPR001878 all species →	Domain	Zinc finger, CCHC-type	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR37984 all species →	PROTEIN CBG26694	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0015074 all species →	Biological Process	DNA integration	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0004190 all species →	Molecular Function	aspartic-type endopeptidase activity	Interproscan
GO:0006508 all species →	Biological Process	proteolysis	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for gene01643.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.