Gene detail

Detailed information of gene01714.t2 in Actinoscyphia liui

Genomic Location: chr1:27285829...27290975
NR annotation: XP_031570969.1, glutamate receptor ionotropic, NMDA 3A-like [Actinia tenebrosa]
Species Actinoscyphia liui · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

gene01714.t2

ATGAACACCAATCCTGCTCTAACGACTTGGAAGCTTAAACACATTGCGAATTCCATGACAGTCAATCTAAAAATACATGAAATCCACATCAGTCAGACACAGACCGGAAGTGAATTTTTGCAAATTTCTAAAGAAATTCTTGTCCTGAACAAAAGTGGCGCATGCGTCGTGGTGCTCGACTGCGGAGATACCCTGGCGGCTTTTATTCAAAACGCCACAGCGACACTTGGAATTCCCCTCGAGAAATTCTTCTGGATCATGTTTAACGAAGAGATGCACAGTGAACAGAGTCAGATGCCTCGAGCTCTGACGGGGATTTTAAAGCTATGCCCAGCATTTACGCTGGAGGACCTGATATCAGATGCCATGAAGTTGTTGAATGTCACCCTTGATTCACAAGAATGGACGTTCAACTTTACCAAGGGAAACACTTCGTGTGTTGGGCCCATGATACCATGGTTTGACACAGAGAAGCTGTTTAGTTCCATGATCAGTCAAACATTCACCGGAAAATCCGGAACCGTGCGTTTTTCCAGTGATGGAGAGCGGCGTAGTATACCTTACAAGATACTGCGTAAGACAAGTGGGAATCGATGGGAGCACGTTGGCACTGCAGTAGATACATCGATCCATCTTAACAGTGAGTTCTGGAAAGTGGATGCAAGCATTGCCTCATCGTATGTAATCAGAATGGCGACCGTAGCTGATGACCCAGTAGTGATGGTCAGTAAGGATGTGCTAAGGCCCAACGAGCGGTGTACTCTATCGCAGTTGTGCATAAGTTACAAACGGATACCAATCCGTGGTACCAATAGAACACGCGTACATAAGATACGTAAATGCTGTGTAGGATACGTAATTGATATTCTTGACCTTATTAAAAACGATCTTGGGATCCACGTGGAATTGTACTTTGCAGAGGACGGCTATTATGGTGCTTATAACGCGACAACCAAGACATGGAATGGTATGATTGGCGACCTGCTCCAACACAAAGCCGAGGTGGCGTTCACTACTATTACAATCAATGAAGTGCGCTCCCATGTTATCGATTTCTCTGTGCCTTTTCTCCATGGAGAGACTAAAATTATGCTGGGCAGAAAGAAGGAAACTCTCAACGTGATTGAGTTTGGTTTTCTTGCTCCTTTTGATAAATATTTATGGATTGCTGGATTAGCCGCGATTAACCTCGTGCTTGTCGTTGTATGGCTCACTGACCACACTAGTCCTTTTGGTCACTACAGATCAAATCGTGGTAGACAAAAGTACGTTTTTAACTTCCCTGCCTGTATGTCGTTCATCTGGAGTGGTGTATTCAAACTAGAGCTTGACTGTAACGCTAGCCCTAGAAGCACAAGTGCCCGCACTACATCAGCGGTGTTTGCCTTTGCAATGCTCATGCTTGTGTCGTCGTACACGGCTAATTTAGCAGCTTCGCTTGTGGTCACCCACGATATTCAAGTAACGACGATACGAGATAAACAGTTTGTAGATCCATCGTCTGGCTTCAAGTTTGCTACTGTGAAGAGTAGTAGCTCAGAAATAGTTTTCACGAGAAGCAAGGATCCTGTTTTCCAACAGATTTATAAGAACATGATTCCACACCAAGTACAGTCTTACTCTGAAGCTGAACATAAATTACAATCAGGAGAACTAGAAGCATTCATCGATGATTCTCCATTCATGGATTTCCTAGCTTCCAGACAACCAGACTGCTCATTCAGAATCGTTGGCAATCCAATCAGTGAGAACAGCTATGGTTTTGCGTTCAGAAAGGAATCCAAATGGAAAGCACCAATCACACAATTGATTTTAAAATACAAGAGGAGAGACCTTTTTGATCGGCTCAGGAAGAAATGGTTCAAAGGCGTATGTGCGAGTAAGAATAAAGTATCGAACCAAGCGTACAAGATGGAATTCAAGCATTTCAGTGGACTGTTTCTAGCGTGTTTAGCTTCAATGATTACTTGCTTTCTGCTACTAATAATAGAACACTTCTTCTATCGATTCAACCGTAAAATCCTGACTACGTACTCGTTGGACTCATCTCGTAACAGCGTACGTGACATGATGCAGGGGAACTCCATGGTGAGAATAAATAAGCTTCGACACAGGAAGCCCACTGGATCACCGATTAGATTAAGTTTTAGTACTCCTTCCAATTCTAGTAACCATACAACGTGA

Transcript

gene01714.t2

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q05586	Glutamate receptor ionotropic, NMDA 1 OS=Homo sapiens OX=9606 GN=GRIN1 PE=1 SV=1
P35439	Glutamate receptor ionotropic, NMDA 1 OS=Rattus norvegicus OX=10116 GN=Grin1 PE=1 SV=1
Q5R1P0	Glutamate receptor ionotropic, NMDA 1 OS=Canis lupus familiaris OX=9615 GN=GRIN1 PE=2 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000921 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00497 all species →	SBP_bac_3	Bacterial extracellular solute-binding proteins, family 3	Domain	Interproscan
PF10613 all species →	Lig_chan-Glu_bd	Ligated ion channel L-glutamate- and glycine-binding site	Domain	Interproscan
PF00060 all species →	Lig_chan	Ligand-gated ion channel	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001508 all species →	Family	Ionotropic glutamate receptor, metazoa	Interproscan
IPR028082 all species →	Homologous_superfamily	Periplasmic binding protein-like I	Interproscan
IPR001638 all species →	Domain	Solute-binding protein family 3/N-terminal domain of MltF	Interproscan
IPR019594 all species →	Domain	Ionotropic glutamate receptor, L-glutamate and glycine-binding domain	Interproscan
IPR015683 all species →	Family	Ionotropic glutamate receptor	Interproscan
IPR001320 all species →	Domain	Ionotropic glutamate receptor, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR18966 all species →	IONOTROPIC GLUTAMATE RECEPTOR	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005216 all species →	Molecular Function	monoatomic ion channel activity	Interproscan
GO:0006811 all species →	Biological Process	monoatomic ion transport	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0038023 all species →	Molecular Function	signaling receptor activity	Interproscan
GO:0015276 all species →	Molecular Function	ligand-gated monoatomic ion channel activity	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for gene01714.t2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.