Genomic Location: chr1:28796428...28799272
NR annotation: KXJ21005.1, Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 6 [Exaiptasia diaphana]
Species Actinoscyphia liui · all data for this species · gene families
| CDS |
| gene01821.t1 |
| Transcript |
| gene01821.t1 |
| Protein |
| gene01821.t1 |
| UniProt accession | Description |
|---|---|
| Q8GVZ6 | Protein G1 OS=Oryza sativa subsp. japonica OX=39947 GN=G1 PE=1 SV=1 |
| Q7XDD0 | Protein G1-like5 OS=Oryza sativa subsp. japonica OX=39947 GN=G1L5 PE=1 SV=1 |
| Q9LMK2 | Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 6 OS=Arabidopsis thaliana OX=3702 GN=LSH6 PE=1 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0000203 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00078 all species → | RVT_1 | Reverse transcriptase (RNA-dependent DNA polymerase) | Domain | Interproscan |
| PF04852 all species → | ALOG_dom | ALOG domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR000477 all species → | Domain | Reverse transcriptase domain | Interproscan |
| IPR043502 all species → | Homologous_superfamily | DNA/RNA polymerase superfamily | Interproscan |
| IPR043128 all species → | Homologous_superfamily | Reverse transcriptase/Diguanylate cyclase domain | Interproscan |
| IPR052055 all species → | Family | Hepadnavirus polymerase/reverse transcriptase | Interproscan |
| IPR006936 all species → | Domain | ALOG domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR33050 all species → | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN | Interproscan |
gene01821.t1. This gene does have a gene model — the search simply returned no hit.gene01821.t1.
