Gene detail

Detailed information of gene01855.t1 in Actinoscyphia liui

Genomic Location: chr1:29293542...29317580
NR annotation: XP_020911009.1, FACT complex subunit SPT16 isoform X1 [Exaiptasia diaphana]
Species abbreviation ALIUI · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

gene01855.t1

ATGTCTGGTACAAAAATATCCCTTGACAAAGAAGCCTTCTTTCGGCGGCTAAAGAGAATATACTCGTCTTGGAAGGCTGAGAACGTCAAACAAGAAAACGGCTCACATTTTCCAAACGTAGGAGCGATTGTCATTGCAGTAGGACAAGATGAGGATGTTATCTACAGTAAATCGACCGCGATTCAGCAATGGCTATTTGGCTATGAGCTGGCCGACACAGTTACTGTCCTTTGTGAATCAACCATCCATTTTTTGGCCAGTAAGAAGAAGATTGACTTTCTAAAGCCACTACAAGATGCTCAGAAGAAACACGAGGACACACCAACCATTGAACTACATCTCAGAAACAAGACAGACCAGGACAAAGCTAACTTTGAAACTCTGACTGAAGCAATAAAGAATGCTACAGATGGTACATCAGTTGGTGTGTTTATTAAAGATAATTTCCAAGGTCCATTTATGGAGGGGTGGAAAGAGGCCTTTGATGCTGAATCATTTGTAAAAGTTGATATCAGTAATGCTATGGCCTATGTTATGGCAGTGAGAGAAGACATTGAGTTAGTCAATGTCAAGAAAGCAGCTCAAGTGTCCTCAGATATATTTGGAAAGTTTTTCAAAAACCAGATTATGGAAATTGTGGATGAAGAAAAGCGAGTGAAGCATGCAAAGATTGCTGATAGTATTGAAAGTGCGCTGGAGTCAAAGAAGTATCTACAACCTGGAATGGACCCCGAGCAGGTTGAGATGTGCTATTCTCCTATCATACAGAGTGGTGGGAAGTTTGCCTTGAAGTTTAGTTCTGTCAGCAATGATGACAGAGTGAATTATGGAGTTATAATCTGTTCACTTGGTGTGCGATATAAATTTTACTGTTCCAATATTGTGAGGACAATGATGGTGGAACCTACAGAGGAGCAACAAGAAAACTATACCTTCCTTCTCGCCATCATGGATTTAATTATTGACAAGTTGCGACATGGTGTTAAGCTGTGTGATGTTTACAAAGCAGCAATGGATCATGTCACCCAAAACAAACCTGAACTTCAAAACAAGTTTGTCAAGAATATAGGGTTTGTTATGGGGATAGAGTTCAGAGAAGGATCTCTCCTAATGACTCCCAAGAATAACCATATTGCTAAGAAAGGAATGGTATTCAACATTAGTGCTGGTTTTTCAGGATTAGTCAACAGCAAAGCAGATAAAGAGCCAAACAAGAACTATGCATTATTTGTTGGTGATACTGTACTGATCAATGAGGGTTCTCCTGCAACTATTCTCACTCCGGCCAAGAAGAAAATCAGCAACATAGGAATATTCCTCAAAGATGAAAATGACGAAGAGGATGAAAAACAAGAAAATGGGGAGGGAGAAGAAGATCTTCTTGTAGTTGGAGAAGGCAAAGGAACATTACTTGAAAGTAGAACAAGGACTGAATTAACGGCTGAAGATAAGCGACGAGCCCATCAGCTAGAACTATCAGAACAGCTTCACGAGGAAGCCAGACGCCGTCTTCTTGAATCTAAAGGTGAAGTACAGAAACCAACAAAAGCAAAACCATCCAATGTTGCTTACAAGAACAACGCCTTGATACCAAGAGATGAGGCCATCAGAGATCTGCAGCTATTTGTTGACAAGAAACATGAGGCAATTATTCTCCCATTGTTTGGCATTCCAACACCTTTCCATATCTCTACCATAAAGAACATTAGTTCAAGCGATGAAGGAGGCTACACTTACTTACGTATCAATCTCTACTGCCCTGGAAGCTCTGTTGGACGGCCAGAAGGAAACCTTTTTCCACAGCCTGAGGCCACATTTGTGAAAGAAGTGAATTACCGTAGCTCTAATACGAAGTTACCCGGGTCAACATCATCAGTCCCCCCATCGCAGAATTTAAGCATGGCTTTTAGACTCATCAAAGAAGTCCAGAAGAAGTTTAAGACGAGAGAAGCTGAAGAAAGAGAGAAACAGGGTGTTGTTCAACAAGGTACATTGAGTCTCAACAATGCTAAAGGCAACCCCAGACTAAAGGACCTTTATATCAGACCAAGTATAACACAGCGAAGGACGCCGGGAATGCTTGAAGCACACAACAATGGTTTCAGGTTTTCAACGTTCCGTGGCGAGCATGTCGATATTTTGTACAGCAACGTGAAGCACTCATACTTTCAGCCTTGTGATGGTGAGATGATTATCCTAATACACTTCCACCTTAAGCATCCGATCATTATTGGCAAAAAGAAGTACAGAGACATCCAGTTTTATACAGAGGTCGGTGAGATAACGACGGATCTTGGTAAACATCAACATATGCATGACAGAGACGACTTACAGGCTGAACAGGCCGAGAGAGAAATGAGGCAAAGACTAAAAGCTGTCTTCAAAAACTTTATCGACAAAGTAGAAGGTTTAACCCACGGAAAGGTTGAGTTTGACGTGCCTTTTAGAGAGCTTGGGTTCTCAGGTGTCCCATTTCGAAGCACAGTGCTTCTACAGCCTACTACACATTGTCTGGTTAACCTTACAGAACAGCCTGTGTTTATAATCACTCTGGATGAAGTAGAGCTTGTACACTTTGAACGTGTCCAGTTCCACTTGAAGAACTTCGACATGGTGTTTATCTTCAAAGAGTACAAACGTAAAGTGGAACACATTAACGCCATCCCCATGACGTCACTGGACTCCGTTAAGGAGTGGTTAAACTCATGTGATATCAAGTACACGGAGGGTATCCAGAGTTTGAACTGGGTTAAAATCATGAAGACGATCAACGACAACCCTGAAGAATTCCTGGAGAATGGTGGCTGGAGTTTCCTTGATCCACAGAGTGATAACGAAGGTGGTGAGAGCGAGGACGAAAGCGCAAGTGACTACGCACCAACAGATTCTGGTGAAGAAGCTTCTGAAGAAGAAAATTTTTCGTCGGAAACGGAGACGTCTGAGGAAGGATCAGATTTCGAGGAAGAACTTGGTAGTGAAGAAGAAAGTGGAAAAGACTGGTCAGAGTTAGAGGAGGAGGCTGCAGAAGCCGACTTTGACAAGGTTGGTTACACCCAGACCCCTCCCAAGTCCAAGAAAAGAAAGAACCCCGCCCCCGCAACATCAACTCGTAAAAGTCCAAGAAAGAAGCAGAAACGTCGCTAA

Transcript

gene01855.t1

TCGATTTTCAGACATCTTTATCTTGTCAAAGAAGACGAAATTATGTCTGGTACAAAAATATCCCTTGACAAAGAAGCCTTCTTTCGGCGGCTAAAGAGAATATACTCGTCTTGGAAGGCTGAGAACGTCAAACAAGAAAACGGCTCACATTTTCCAAACGTAGGAGCGATTGTCATTGCAGTAGGACAAGATGAGGATGTTATCTACAGTAAATCGACCGCGATTCAGCAATGGCTATTTGGCTATGAGCTGGCCGACACAGTTACTGTCCTTTGTGAATCAACCATCCATTTTTTGGCCAGTAAGAAGAAGATTGACTTTCTAAAGCCACTACAAGATGCTCAGAAGAAACACGAGGACACACCAACCATTGAACTACATCTCAGAAACAAGACAGACCAGGACAAAGCTAACTTTGAAACTCTGACTGAAGCAATAAAGAATGCTACAGATGGTACATCAGTTGGTGTGTTTATTAAAGATAATTTCCAAGGTCCATTTATGGAGGGGTGGAAAGAGGCCTTTGATGCTGAATCATTTGTAAAAGTTGATATCAGTAATGCTATGGCCTATGTTATGGCAGTGAGAGAAGACATTGAGTTAGTCAATGTCAAGAAAGCAGCTCAAGTGTCCTCAGATATATTTGGAAAGTTTTTCAAAAACCAGATTATGGAAATTGTGGATGAAGAAAAGCGAGTGAAGCATGCAAAGATTGCTGATAGTATTGAAAGTGCGCTGGAGTCAAAGAAGTATCTACAACCTGGAATGGACCCCGAGCAGGTTGAGATGTGCTATTCTCCTATCATACAGAGTGGTGGGAAGTTTGCCTTGAAGTTTAGTTCTGTCAGCAATGATGACAGAGTGAATTATGGAGTTATAATCTGTTCACTTGGTGTGCGATATAAATTTTACTGTTCCAATATTGTGAGGACAATGATGGTGGAACCTACAGAGGAGCAACAAGAAAACTATACCTTCCTTCTCGCCATCATGGATTTAATTATTGACAAGTTGCGACATGGTGTTAAGCTGTGTGATGTTTACAAAGCAGCAATGGATCATGTCACCCAAAACAAACCTGAACTTCAAAACAAGTTTGTCAAGAATATAGGGTTTGTTATGGGGATAGAGTTCAGAGAAGGATCTCTCCTAATGACTCCCAAGAATAACCATATTGCTAAGAAAGGAATGGTATTCAACATTAGTGCTGGTTTTTCAGGATTAGTCAACAGCAAAGCAGATAAAGAGCCAAACAAGAACTATGCATTATTTGTTGGTGATACTGTACTGATCAATGAGGGTTCTCCTGCAACTATTCTCACTCCGGCCAAGAAGAAAATCAGCAACATAGGAATATTCCTCAAAGATGAAAATGACGAAGAGGATGAAAAACAAGAAAATGGGGAGGGAGAAGAAGATCTTCTTGTAGTTGGAGAAGGCAAAGGAACATTACTTGAAAGTAGAACAAGGACTGAATTAACGGCTGAAGATAAGCGACGAGCCCATCAGCTAGAACTATCAGAACAGCTTCACGAGGAAGCCAGACGCCGTCTTCTTGAATCTAAAGGTGAAGTACAGAAACCAACAAAAGCAAAACCATCCAATGTTGCTTACAAGAACAACGCCTTGATACCAAGAGATGAGGCCATCAGAGATCTGCAGCTATTTGTTGACAAGAAACATGAGGCAATTATTCTCCCATTGTTTGGCATTCCAACACCTTTCCATATCTCTACCATAAAGAACATTAGTTCAAGCGATGAAGGAGGCTACACTTACTTACGTATCAATCTCTACTGCCCTGGAAGCTCTGTTGGACGGCCAGAAGGAAACCTTTTTCCACAGCCTGAGGCCACATTTGTGAAAGAAGTGAATTACCGTAGCTCTAATACGAAGTTACCCGGGTCAACATCATCAGTCCCCCCATCGCAGAATTTAAGCATGGCTTTTAGACTCATCAAAGAAGTCCAGAAGAAGTTTAAGACGAGAGAAGCTGAAGAAAGAGAGAAACAGGGTGTTGTTCAACAAGGTACATTGAGTCTCAACAATGCTAAAGGCAACCCCAGACTAAAGGACCTTTATATCAGACCAAGTATAACACAGCGAAGGACGCCGGGAATGCTTGAAGCACACAACAATGGTTTCAGGTTTTCAACGTTCCGTGGCGAGCATGTCGATATTTTGTACAGCAACGTGAAGCACTCATACTTTCAGCCTTGTGATGGTGAGATGATTATCCTAATACACTTCCACCTTAAGCATCCGATCATTATTGGCAAAAAGAAGTACAGAGACATCCAGTTTTATACAGAGGTCGGTGAGATAACGACGGATCTTGGTAAACATCAACATATGCATGACAGAGACGACTTACAGGCTGAACAGGCCGAGAGAGAAATGAGGCAAAGACTAAAAGCTGTCTTCAAAAACTTTATCGACAAAGTAGAAGGTTTAACCCACGGAAAGGTTGAGTTTGACGTGCCTTTTAGAGAGCTTGGGTTCTCAGGTGTCCCATTTCGAAGCACAGTGCTTCTACAGCCTACTACACATTGTCTGGTTAACCTTACAGAACAGCCTGTGTTTATAATCACTCTGGATGAAGTAGAGCTTGTACACTTTGAACGTGTCCAGTTCCACTTGAAGAACTTCGACATGGTGTTTATCTTCAAAGAGTACAAACGTAAAGTGGAACACATTAACGCCATCCCCATGACGTCACTGGACTCCGTTAAGGAGTGGTTAAACTCATGTGATATCAAGTACACGGAGGGTATCCAGAGTTTGAACTGGGTTAAAATCATGAAGACGATCAACGACAACCCTGAAGAATTCCTGGAGAATGGTGGCTGGAGTTTCCTTGATCCACAGAGTGATAACGAAGGTGGTGAGAGCGAGGACGAAAGCGCAAGTGACTACGCACCAACAGATTCTGGTGAAGAAGCTTCTGAAGAAGAAAATTTTTCGTCGGAAACGGAGACGTCTGAGGAAGGATCAGATTTCGAGGAAGAACTTGGTAGTGAAGAAGAAAGTGGAAAAGACTGGTCAGAGTTAGAGGAGGAGGCTGCAGAAGCCGACTTTGACAAGGTTGGTTACACCCAGACCCCTCCCAAGTCCAAGAAAAGAAAGAACCCCGCCCCCGCAACATCAACTCGTAAAAGTCCAAGAAAGAAGCAGAAACGTCGCTAATCGAATAAGTCCTCCAGTGTACATATAAACAGTCGGCATGGTTTTCATGTTAGATGGAGACCAGCAGTGCTGATACCTCCTCGTAAAATCAACAAGCTTGAAATCCTGTTGATTCCAGTCTCCAGCTGTCAGGATATTATGCGCCGGTGGTACTTTCCCTTTGAAGGCTGGACCTAGTTAATTGCTAGATTGTGTTCTGTATAAACATTACAGATACCTATGCGTACTTCTGCTGACCGATTTTTACTGTGATCCCGGCACTAATTTTTGGTGTTCTTGTATTCCACAAAAGAAGCATAAAATGTGAGACTGATTGACTGATTGATGAGCAAAATCTACGACGGCGTTCTTGTTCGCTGATACTTTAAACATTGACTTGAACAGGTCGTGGTGTTTTGTTAGCTGATACTTTAATCATTGACTTGGAACAGGGAGTGGTGTTTGTGAAAGTGTGCGCGCACTTATTCGGTTTGTTAGCTGATACTTTAATCATTGACTTGGAACAGGGAGTGGTGTTTGTGAAAGTGTGCGCGCACTTATTCGGTTTGTTAGCTGATACTTTAATCATTGACTTGGAACAGGGAGTGGTGTTTGTGAAAGTGTGTGCGCACTTATTCGGTTTGTTTGAAGTCATTGGAATGTTACCAGTAAATTATACCCAAGCATATGATTGTCGGTTTCTACCTCAGATGGTCAACAGCATCCATGAAGCACTGTATTTACTAATAAACATCTAAAAACTCTTCACTGGTCGAATTGTTTGCTTCATTGTCTTCCATTCTCGTTAAAATTGTCAGGACTGTAGCTAGCCTATAGGCCTACAGGCAAAGTGGCAAGTATTCTTTTCTGCTTCCCGATCAAGCTGAACCACATTAGAAGTTGACTCACATTAAAAACCGGGCCTACAAATTTTAAAATCCTGGATACGCCCCTAATT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9Y5B9	FACT complex subunit SPT16 OS=Homo sapiens OX=9606 GN=SUPT16H PE=1 SV=1
Q920B9	FACT complex subunit SPT16 OS=Mus musculus OX=10090 GN=Supt16h PE=1 SV=2
Q9W603	FACT complex subunit SPT16 OS=Xenopus laevis OX=8355 GN=supt16h PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003211 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08644 all species →	SPT16	FACT complex subunit (SPT16/CDC68)	Domain	Interproscan
PF00557 all species →	Peptidase_M24	Metallopeptidase family M24	Domain	Interproscan
PF08512 all species →	Rttp106-like_middle	Histone chaperone Rttp106-like, middle domain	Domain	Interproscan
PF21091 all species →	SPT16_C	FACT complex subunit SPT16, C-terminal domain	Domain	Interproscan
PF14826 all species →	FACT-Spt16_Nlob	FACT complex subunit SPT16 N-terminal lobe domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR029149 all species →	Homologous_superfamily	Creatinase/Aminopeptidase P/Spt16, N-terminal	Interproscan
IPR029148 all species →	Domain	FACT complex subunit Spt16, N-terminal lobe domain	Interproscan
IPR013719 all species →	Domain	Histone chaperone RTT106/FACT complex subunit SPT16-like, middle domain	Interproscan
IPR013953 all species →	Domain	FACT complex subunit Spt16 domain	Interproscan
IPR036005 all species →	Homologous_superfamily	Creatinase/aminopeptidase-like	Interproscan
IPR000994 all species →	Domain	Peptidase M24	Interproscan
IPR011993 all species →	Homologous_superfamily	PH-like domain superfamily	Interproscan
IPR040258 all species →	Family	FACT complex subunit Spt16	Interproscan
IPR048969 all species →	Domain	FACT complex subunit SPT16, C-terminal domain	Interproscan
IPR033825 all species →	Domain	FACT complex subunit Spt16, peptidase M24-like domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13980 all species →	CDC68 RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006368 all species →	Biological Process	transcription elongation by RNA polymerase II	Interproscan
GO:0031491 all species →	Molecular Function	nucleosome binding	Interproscan
GO:0035101 all species →	Cellular Component	FACT complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K25639	SUPT16H, SPT16; FACT complex subunit SPT16	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.