Gene detail

Detailed information of gene01972.t1 in Actinoscyphia liui

Genomic Location: chr1:31144030...31147498
NR annotation: XP_031571372.1, xylulose kinase-like [Actinia tenebrosa]
Species abbreviation ALIUI · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

gene01972.t1

ATTTTTTGATTTAATACTCCTTGACTTCCAGCTTGAAAATCGCTAACAATTATACCAATCTGTCTCGTAGACTCCACAAACTGCTCAATAGTTTGTTCAAGGAGATCAAAAGGCTCAGCTGGCTTGTCGTCCGCCATTTTGAACCAGATTGCATTCCACAGGGAGCCCAATCGGTGGTATCTTCTTTGTGCCAGACAAAGATGGCTTCTCCCGTTTTCCTTGGATTTGACCTCAGTACACAGCAACTAAAGGCTATAGCGATCGATAATGAGCTTACTATACTACATGAAGCGTCAGTACACTTTGATCATGACTTACCAGAGTTTAAAACGCAAGGAGGAGTACATCAACACGACGACAAACTTACAGTCACTGCTCCAACTTTGATGTGGATCAAGTCATGTGACATGCTGTTGGAGCGTATGAAGGCCAAGGGTTTCGATTTTAAGTGTGTTGTGTGTGTATCTGGTACAGGACAACAACATGGTAGCGTTTACTGGAAGAAAGGAGCCCAGGAGATTTTGAAGTCTTTGAATAAAGAACAAGTCTTCTGTGATCAGCTAAAAGATTGTTTTGCAACAGAAGATTCTCCAATATGGATGGATTCTAGTACAACAGCACAATGCCGCTCTCTTGAAAAGGCAATGGGTGGCCCCAAAAAGGTTGCAGAGATAACTGGATCAAGAGCTTACGAGCGCTTTACAGGCAATCAGATTGCCAAGATCTTTCAAACAAACCCCAATGCGTATGCAAACTGTGAAAGGATCTCTCTTGTCAGTAGTTTTGCTGCATGTCTGCTAATTGGTGGATATGCACCCATTGACTATAGCGATGGTTCAGGGATGAATTTGATGAACATTGAGTCTAAAGACTGGGATGTAGGGTGCTTAGAGGCGTGTGCACCAGGCCTTAAAGAGAAACTTGGATCACCAGCTCCCAGCTTCTCCCAAGTTGGCAATATCTCTCAGTATTTGGTGGACAGATATGGTTTTTCCCCCGACTGTAAAGTGGTTGCATTCACAGGGGATAACCCTGCATCTCTTGCTGGGATGAGGCTTGATAAAGGAGATGTTGCTATCAGTCTAGGAACTAGCGACACCCTGATGCTGTGGCTCGAGAAGCCTTGTCCTGCTCTGGAAGGACATATATTTGTCAACCCAGTTGATACAAGTGCATACATGGCTCTTCTTTGCTTCAAAAATGGATCTCTCACCAGAGAATCCATCAGAAATTCCTGTGCTAGCTCAGAATGGGAACAATTTAACCAGGCTCTCAAATCAACTTCTCCTGGAAATAATGGGAATATTGGGATTTATTTTGAGGCCACGGAGATCACCCCATTTGCCAGTGGAATATATAGGTTTGATGACAAAGATGAAAAGGTTGATACCTTTGCCAAGGAAGTTGAGATAAGGGCACTTATTGAGGGTCAGTTTATGGCTAAAAGGGCACATGCAGAGCTCTTGGGCTATACTCTAGCTCCAGGATCAAGAGTTCTGGCTACGGGAGGAGCATCATCAAACGACACAATTCTACAGGTCCTTGCAGATGTCTTCAATGCTCCTGTCTATACCATCAAAGACACTGCTAACTCAGCCTGCTTAGGATGTGCATACCGTGCAAAGCACGGCTGGATTGGACCAGCAGGCCACTCCTTCAAGGAAATTGTCAATATGGCACCAGCATATCAGTTAGCAGTGACACCACGACAAGATGCTGGTGAAATTTACACTGCTTTAACTGCCAGATATATTGCACTTGAACGAAGTATAACAAAAGAATAGTATAAATTTAAAAACAAAATGATGTCACTGGAATCCATATAAATTATTTTTAAAATAGACCTCAACCACAGGTAACCCAAGTGAAGCATCTATTGATATATTGGGCTCCCTATGTTTGAAATGTCTGAACAATTCATTATATGCAAATAAAATATTTTCCAGTATAATAATAAATTGTAGGGGTGCCCATGAGAACGGTGTATGTGAGTTTTGTCAATTTATTTGGTACTTGTCTGAAATTCGCTGAAAATCAGAAATCTGACTCTTCATGGAAATGGCGGGAAATCTGTGTTGGACCACGTCGTCTGTGAACACCAATGAGAGTTATGAACTAATCGTCGATACGAGTTTATATAAACAACCTTTGAAACGAAACTACTGGGTTTCCTGTGTCTTTTGTAGGCTATACTTCCCCACTTGTACGTAAGTGGATGTTACCGGGAGGGAGGGGCAATAAACCAATTTTTATACCAGGAGACTCCATGTGTCGTGATTTAGGAGTTTCCTCAGTTGTATCTTTTTCTGCAGGCTGGGACGGATCAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q3MIF4	Xylulose kinase OS=Rattus norvegicus OX=10116 GN=Xylb PE=2 SV=1
Q3TNA1	Xylulose kinase OS=Mus musculus OX=10090 GN=Xylb PE=1 SV=1
O75191	Xylulose kinase OS=Homo sapiens OX=9606 GN=XYLB PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006978 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02782 all species →	FGGY_C	FGGY family of carbohydrate kinases, C-terminal domain	Domain	Interproscan
PF00370 all species →	FGGY_N	FGGY family of carbohydrate kinases, N-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR018485 all species →	Domain	Carbohydrate kinase FGGY, C-terminal	Interproscan
IPR043129 all species →	Homologous_superfamily	ATPase, nucleotide binding domain	Interproscan
IPR000577 all species →	Family	Carbohydrate kinase, FGGY	Interproscan
IPR042024 all species →	Family	D-xylulose kinase	Interproscan
IPR018484 all species →	Domain	Carbohydrate kinase FGGY, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10196 all species →	SUGAR KINASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005975 all species →	Biological Process	carbohydrate metabolic process	Interproscan
GO:0016301 all species →	Molecular Function	kinase activity	Interproscan
GO:0004856 all species →	Molecular Function	D-xylulokinase activity	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0005997 all species →	Biological Process	xylulose metabolic process	Interproscan
GO:0016310 all species →	Biological Process	phosphorylation	Interproscan
GO:0042732 all species →	Biological Process	D-xylose metabolic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K00854	xylB, XYLB; xylulokinase	EC:2.7.1.17	Pentose and glucuronate interconversions	ko00040	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.