Gene detail

Detailed information of gene01991.t2 in Actinoscyphia liui

Genomic Location: chr1:31321584...31339367
NR annotation: XP_020905750.1, ATP-dependent RNA helicase DDX1 isoform X1 [Exaiptasia diaphana]
Species abbreviation ALIUI · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

gene01991.t2

Transcript

gene01991.t2

ATGGCGGGACATTTTTCAGAATTTGGCTTGCTGCCAGAGATTTGTAAGGCAATTGAGGACATGGATTGGCTTCTGCCTACAGATGTGCAAGCAGAAGCTATTCCCCTTATTCTAGGAGGAGGCGATGTTCTTATGGCTGCAGAAACAGGCAGTGGAAAGACAGGTGCATTTTGTCTCCCTGTTATACAAATTGTTCACGAAACTATCAGAGATGCCATGTCTGGTAAAATGCCCAAACCAGGAGCTGCTCAAGGTGGAGGGCCAACAGAGTTTAAAATGAATCCATACGACAGAGATGAGAACTTTGCTATCGGTGAGGATGGACTGTTGTGTCAGAGCCGTGAAATGTTTAAGTGGCAGGGTTGTCGTTCAACATTAGGGGTCAAAAAGGGGAAGTATTACTATGAATCAACTGTCACCGATGAAGGCTTGTGCAGGGTTGGCTGGTCAACCTCTCAGGCAACAATGGATCTAGGAACTGACCAATATGGTTTTGGCTTTGGTGGTACTGGTAAAAAGTCCAATGCAAGACAATTTGATAGTTATGGAGAGGCATTTGGAATCAATGATGTCATTGGATGCTACATTGACCTGGATAACTACAGCATGAAGTTTAGTAAAAATGGGGTGGACTTTGGCAAAGCATATGACATCCCTGATGAGCTTGATGGGAAAACATTCTTTGCAGCAGTTGTTCTCAAGAATGCAGAGATGAGCTTCAACTTTGGTGAAAAGAAATTTTCATTTCCACCTTCTGGTAAATTTATGGCATTATCAAAGGCACCTAAAGATGCCACAGCTGCTTCGAATATAGCAACAGGAGGGGCAGCACAGACAAAGCCAGGAAAGTTCTCTAACAAGTGTGCTCCATCTGCCATTATCATAGAGCCTTCAAGAGAATTAGCACAACAAACACATCAGCAAATCAGGTTATTTGACAAGCAGCTTCCTGATCCTAAAGTAAAGTCTGTTTTGTTAGTTGGTGGAGAGAACACTAAGGACCAAATAAGGGCCATCAATGAAGGGGTTGACATCATAACAGGAACACCTGGTAAACTAAGTGACTTTATACAAACTGACAAGATTAGCTTACATCAGGTCAGCTTCTTCATTCTTGATGAAGCGGATGGCCTACTTTCACAAGGGAATAGTGATTTAATCATGAAAATATACCAAAAGATGCCAAAAATAGGTCCTGCTGGAAAACGTTTGCAGATTATTACATGTTCTGCAACTCTCCACTCATTCGATGTCAAGAAGTTGGCTGAGCGCATCATGCACTTCCCTACGTGGGTGGACCTCAAGGGACAGGATAGTGTCCCTGAAACTGTACATCACGTGGTGTGTCATATTGATCCTCGTTCAGACTCGTCATGGATGAATCTCAAGAGCCCAGTTAGAACAGATGGCATGCATAAGAAGGACAACATCAAATCAGGAAGTCAAACACCAGAGACGCTGTCTGAAGCAGTGAAGATTCTGAAGGCTGAATACTTGAAGAGAGCCATTGATGTCCACAATATGGACACTGCTATTATCTTTTGTCGAACCAAGATCGATTGTGATAACATAGAACAATACTTACTCAGCCACGGTGGAGGTCCTCGTGCTATGGTTAACCCATACTCGTGTGTGGTTCTTCACGGAGATAGGTCACCTCCGGAACGAAAAGGCAACCTGCAAAAGTTCAAGGATAATGAAGTTCGTTTTCTAATTTGTACTGACGTTGCTGCCAGAGGAATTGACATCAAGGGAGTGCCTTATGTTATCAACGTAACGTTCCCAGATGACAAGCAGAATTACGTTCACAGGATTGGTCGAGTAGGCAGAGCAGAGAGAATGGGGCTCGCAATTTCTCTAATTGCAGATGTGAAAGAAAAGGTGTGGTACCACGTGTGTTCAAGTCGTGGCAAAGGTTGTTTGAATACGCGTCTTAAAGACCAGGGAGGGTGTTCTATATGGTACGACGAGGTTCAGTATCTAGGTGATGTCGAGCAACACCTTGGTGAAACCATTCCTGTAGTCTCAACCGACCTGAAGGTCGAGAGTAATGAATTTGATGGCAAGGTTGTTTATGGAGAGAAAAAAAGCAAAGGATCATCGTTTGTAACTCATGCAGCAGAACTAGCACCGTCTGTAAGAGACCTGGAAAGCCTGGAACGTCAGGCCCAGACGTCATTCCTGGGTTTAAAACATCGACAATGGGCCAATATCTAATTATTGCTGTATTATTATTATAAATTATTGGGTCTCCTTAAGGGACCGATCGTTTATTACGTCGCAGGTGGAGGCGGTGGAATTTTGAAAAAAGCGTAAAGTAAAATTTGTACCCCCCTCTTCATCATAATTTAGAAAAAATGTACCCCTCCTGTGCTATATCTTTTGTTTATAAAACTGTACTCCCCCAAAATATTTCAGAATTATAAAAAACGTACCCCCAATTTCAACTGATTTTGAAAATTGTACCCTCCCCTTAATTCCTCCGCCCCTCCCTGCGACGTAATAAACGATCGGTCCCTAAAGTTCACATTTTTCCAAATACTATTGTACTGGGACAGTTTCAGTGCAAGATATGTAATATATAAAATATGAGTGGCCGGTCGGACGCGAATATTTTATGTTATTTATCAAATCCAGCGATGTATTACTCCAGGTTTTGTTATAATTTTGAAGAAACAAACTAGTTTGACTGAGAAAATCAAAGTTAAAGTTGATGCAAATCAGGACGAATCTCTTGCCGATTTAAAGATCCTTGCTACGCTTATGATTTCTATTGTTTTAAGCTCATGAATGATTAATGATTTGATAATGAATATTATCGAACCACGCGCATGCTCCTTGAAAGGAATGATCTAATGTATGGCGCACAAAAGTTAACGCCCAAAACCGTCCATTAGAAATTATTTGGATTAAAATGAGGCATGGAAGTATACAAGAATAAATGTTATTAAAAAAGAGACGATTGGAATCAAAACTAATTTTCTCAGAGCATGAAATAATGGTTACCGTAAGTGGAAAAAGTTCGACTAAGTGGTGGGAGTTTTAGTTGAGTGATATTTTTGTGTCGTTAGACTCAGCGTGAAAACTATTTCACAATATTTATGAAGTTTTTCATGTTTTTAATTTAAAAGCAAATAAACAAAGCTTTATTGCTCAACAACTTACAACCA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A2VD92	ATP-dependent RNA helicase DDX1 OS=Xenopus laevis OX=8355 GN=ddx1 PE=2 SV=1
Q90WU3	ATP-dependent RNA helicase DDX1 OS=Gallus gallus OX=9031 GN=DDX1 PE=1 SV=1
Q0IIK5	ATP-dependent RNA helicase DDX1 OS=Bos taurus OX=9913 GN=DDX1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003559 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00622 all species →	SPRY	SPRY domain	Family	Interproscan
PF00271 all species →	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan
PF00270 all species →	DEAD	DEAD/DEAH box helicase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003877 all species →	Domain	SPRY domain	Interproscan
IPR001650 all species →	Domain	Helicase, C-terminal domain-like	Interproscan
IPR014014 all species →	Domain	RNA helicase, DEAD-box type, Q motif	Interproscan
IPR014001 all species →	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan
IPR043136 all species →	Homologous_superfamily	B30.2/SPRY domain superfamily	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR013320 all species →	Homologous_superfamily	Concanavalin A-like lectin/glucanase domain superfamily	Interproscan
IPR011545 all species →	Domain	DEAD/DEAH box helicase domain	Interproscan
IPR001870 all species →	Domain	B30.2/SPRY domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24031 all species →	RNA HELICASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0003724 all species →	Molecular Function	RNA helicase activity	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K13177	DDX1; ATP-dependent RNA helicase DDX1	EC:5.6.2.7	Transfer RNA biogenesis	ko03016	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.