Gene detail

Detailed information of gene02183.t1 in Actinoscyphia liui

Genomic Location: chr1:34049880...34055349
NR annotation: XP_020894106.2, mitochondrial inner membrane protein OXA1L [Exaiptasia diaphana]
Species abbreviation ALIUI · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

gene02183.t1

ATGGCGGCGCTATTTCCACGTGTGGGTCGAAAAACCAACATTTGGAGATCGCTCCTGTCTTATAGCTCGACACGTTCTGCAAGTGTCAGAAGTAGTACAACATCTTTTCGTCTGCAAACTGGGATTCATCGCAATCATACGCAAAGACTTCTGTATTCAAGATGTGTGGGGAAAAGTTCTGTAGTTCTTGGAGTGAGAAACTTCTCTCAGGAAACTGGAGGCCTGCAATCAGGTGATATATCACAGGGTAGCATAGCGACAGAAAACCCTTTCATCACAGACCCACAAGCAACCATTGATACTATTACCTCTGGAACTGACATGCTCAAAGATGCAGCGCACACTCTTAATTCCCTCGGCGAACCCACCTTGACGAGTCTTGGCCTTGGTGGGTCTTCACCTATTGGACTGGTCCAACAAGCAGTGGAATTAATCCACACTTCACTTAGCCTCCCATGGGTGTGGTCAATTGTCGCAGCAACTGTGGTATTCCGTTTACTCATGTTTCCATTAATAGTCAAGGCACAGGTGAATGCCGCAAGGCTTAATAACATTAAACCGGAGTTGGAGGAGATACAAAGTCAATTAAGAGAACTTATGAACACTAATGATGCTGTAGGGAAGGCTACAGCTACATTTAAAATGAAACAGTTGTATGAAGATAATAAATGCCATCCTATGAAGAGTGTAATAGCACCATTAGTGCAGCTACCACTATTTGTATCATTTTTTATTGGTCTACGACGTATGGCTACTTTACCAGTAGAGGCCCTTCAGACTGGTGGTTTGTGGTGGTTCACAGACCTAACTACTTATGACCCATACTTTGTTCTTCCAATTGTCTGCAGTCTTACAATGTTGGCATCAATAGAGCTTGGTGGAGAAGCAGGAGTGAACAATCCACAAATGCAGAATATGAAAGCTTTCTTTAGAGTCATGTGTATTATTATGATACCAATGACAGCACAATTCCCTACAGCAATCTTCAGCTACTGGATAACATCCAACATTTTTTCTCTGGGGCAAGTGTCATTGTTAAAGCTCAAATCTGTACGGCAGTTCTTTGATATTCCTGATATGAAAGTCTACCAGGACCTGACGCCACAGGGAGGATTCTGGGAAAATATGAAAGCAGGATACAAAAACTCCCAAGAAAGCGCATACGTGAAACACCACGAGAAAATGAAAAGGCAAAGAGCAAAAGCGCTTGGTCAGGCTCCCCTTGAACCCACATATGAACACAACCCACGAATCAAGCACAATCAACAAGTTTTCTCTCCATCAAACAAGAATGACAAAACTGAAAAGTTTAAAAATAAACCTGGTCCTTCGATGTGATAATGAAACCTCAACGCTCTACTTTAAATTCTGCTTATAACAACCGAAGCCTTACAAGATTGATTACATTGCTCGATGATCAAAACAAAGACAGCTTACATGTATGCACAGGTTTGAGTGTGCGGCTTGAAAGCATTTATGGAAGACGAAAGTCGCGCAAAATATTAATCTATATTGGCAAGCTTATCAGACCTCTATTTAAATGTGAGCTAGAACAGATGATTATGACCTTGAAAAACCATGTTACGACACAGATCTCGAAGACTGCACAGAGCGGCCGGGCAAGAAAGCCATGTGACAGTGAAACTAAGCCGCGGCAAACCTCTACGCGGTCGGCACATGCAGTCATACGAAATCTGCTCTGATTAACAATTAGAAGGAAAACTCGAGATTTATATCGGCAGATAGTTGACAAGGGGCGATCGCAACTATCAAAGCCGATAGAAATCGAGAATGAGTCTTCTAATGCAGGGGCGTAGCCAAGATTTTTTCGGAGTGACGCACAATTGTGAAATTTGAACTCAAAGGCCCATTTTTATAAAAACAATCTACTTTTTCTTCCTTTCAAAAACTTTGAGTGAAGCACGTGCGTCCGGGGTACAGGTAGCTACGCCCCTATAATTGTTTTAGTAAAACTCTATTAGTGTTCATATTGCAAAGAAAAGCATGTTTTGGTGATTTTTTTTGCGCTTTTTCCGCTATCTATCGGCTGATAGATAGCGAGTACAATAGCCTATCAGAATGCGGGATTTGCAATAGAACACTAGTAGAGTTTTACTAATGACATAGGGTTGTTGAGCAGGTATCAGGCCCACCTTTTATACTGCTGCATTCTCTTTACTGGACTGAATATGATAGGAGTGGGAACCCTACCGTACCGTGACACTTCAATGGCTTCCGCTCTG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q3SYV3	Mitochondrial inner membrane protein OXA1L OS=Bos taurus OX=9913 GN=OXA1L PE=2 SV=1
Q8BGA9	Mitochondrial inner membrane protein OXA1L OS=Mus musculus OX=10090 GN=Oxa1l PE=1 SV=1
Q15070	Mitochondrial inner membrane protein OXA1L OS=Homo sapiens OX=9606 GN=OXA1L PE=1 SV=4

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006528 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02096 all species →	60KD_IMP	60Kd inner membrane protein	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001708 all species →	Family	Membrane insertase YidC/ALB3/OXA1/COX18	Interproscan
IPR028055 all species →	Domain	Membrane insertase YidC/Oxa/ALB, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12428 all species →	OXA1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0031305 all species →	Cellular Component	obsolete integral component of mitochondrial inner membrane	Interproscan
GO:0032977 all species →	Molecular Function	membrane insertase activity	Interproscan
GO:0032979 all species →	Biological Process	protein insertion into mitochondrial inner membrane from matrix	Interproscan
GO:0051205 all species →	Biological Process	protein insertion into membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K03217	yidC, spoIIIJ, OXA1, ccfA; YidC/Oxa1 family membrane protein insertase	-	Secretion system	ko02044	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.