Gene detail

Detailed information of gene02243.t1 in Actinoscyphia liui

Genomic Location: chr1:34752617...34759352
NR annotation: XP_020897142.1, aspartate aminotransferase, mitochondrial [Exaiptasia diaphana]
Species abbreviation ALIUI · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

gene02243.t1

AAATATAGAAGTGTAGACCGTTGTGTGATCAAGATGGCACTTCAGCAGGCTTTGGGACGCTCCCTTCAAACGTCTAGTAGGGCTTTTGCGATGATCGGTGCACGAGCAAGTTCTTGGTGGTCAAATGTTGAGCTTGGGCCTCCTGATGCCATTCTTGGTATAACAGAGGCATTCAAGAAAGACACCAACCCACAGAAGATTAACTTAGGTGTTGGTGCCTACAGAGATGATTCAGGCAAACCGTATGTACTGCCATCAGTTAAGAAGGCAGAAGAAATTATTGTCTCCAAAAGTCTAGACAAAGAATACGCCCCAATTCATGGTATTGCTGACTATGTCAGTGCTGCAGCTAAGCTGGCTTTTGGAGCTGACAGTAATGTCATCAAAGAAGGACTGAATGCGTCAGTACAGTCTATATCAGGAACTGGTGCACTTCGAATTGGTGGAGTCTTCCTGGAAAGGTTTTTCCCTGGAAACAAGACAGTCTACTTACCAACCCCCTCATGGGCAAATCACACTCCTATCATAAGGGATTCTGGACTACAGTTAGGTCAGTATCGCTACTACGACCCTAACACTTGTGGCTTTGATTTCTCTGGGTGCTTAGAAGACTTGTCTAATTTGCCAGAACATTCAATAGTTTTTTTCCATGCCTGTGCTCACAACCCAACTGGAGTCGACCCAAAGCTTGAACAATGGAAAGAGATCAGTGAAGTTGTTAAGAAAAGGAAACTGTTCCCATTCTTTGACATGGCGTACCAAGGCTTTGCTAGTGGTGATGCAGCAAGAGATGCACAAGCCGTGAGGTACTTTATTGAACAAGGTCACAGTATGGTCTTGGCTCAATCCTTTGCTAAGAACATGGGCTTGTATGGTGAGAGAACTGGTCTCTTCAGCGTAGTAGGTGCCTCACAAGAAGAAGCAAATAGAGTTCTTTCACAAATCAAGATTATCATCCGTCCAATGTACTCCAGTCCCCCTATCCATGGAGCAAGACTAGCTGGCCTGGTGCTGAATGACCCTGAACTCCGACCACAGTGGGAGGGGGAGGTCAAGGGTATGGCAAACAGAATCATTTCCATGAGACAAAAACTGTCAGATAACCTCAAGAAAGAAGGTTCTACACTAGACTGGGCACATATCACAGACCAGATTGGTATGTTCTGTTACACTGGACTAAAGCCTGACAAGGTTCAAAGACTCACAAAGGAATTCTCCATCTACTTGACTAAAGATGGGCGTATCTCCATCGCCGGTGTGACGTCACACAATGTGGGTTACCTGGCTAATGCTATGCATGCAGTCACCAAGTAGATGTGACGTCACAAGTGTGACGGCAGGTCTAGATGTCATTTGGACATTTCAAACTCCTGACCACTGTGAAAGGATGTATTATTTTGTGGAGGTGGGGTGAATTGAGGAGTAGGGATGAACTGTGTTTGGAAAACAATGAAATCGAAGTAGAAAGAAAATTTTAAAAATATTCATAAAAAAGATATAGAAAGCCACTTTGTTTGGCAAATAAATTATGAATGCTTCTATACGTGACATTTTAAGTAATGATTCGCCTAAGAACGATAGCAGGAATGCAAAAGGTGTTAATTTTAAATTCTTCTTTCTTGTAATTTCATTGGTTGATACTCATAAATTCAATAGAAAACCAAGCAAGGAATTCATTTTCATTAGATATTTTTGAAGATGTAACATAATTTTGCTCACAAACCAACTATGGCTTTATTTCAAAGTGAATCCCATGTGAGGAAATGTTTAAATTTGTCATTCATAGATTCTGATTGTATTTCCGCTTTTCTATTGCCTGCATTTCAGAGTTCAATGTCAGTTCCCTCAGTTAAAATGGAGACTCATCCTTAAAACTATTTTCTGGCAGTAAATTGTCTGTGGACATCTAAAAGAGCATTTTAGTTAAGCAAACTCGTATGTGAGGATATGCTCATGCCGCAACCTATCGTCTTTTGCTATCGTTCTTAGGTAAATCATTACTTAATATAAATCTACACATGTATCGTTTATACTGTCTGTCAGAATAACTACAATAAATAAAGATTTTG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P12345	Aspartate aminotransferase, mitochondrial OS=Oryctolagus cuniculus OX=9986 GN=GOT2 PE=1 SV=2
Q4R559	Aspartate aminotransferase, mitochondrial OS=Macaca fascicularis OX=9541 GN=GOT2 PE=2 SV=1
P00507	Aspartate aminotransferase, mitochondrial OS=Rattus norvegicus OX=10116 GN=Got2 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001598 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00155 all species →	Aminotran_1_2	Aminotransferase class I and II	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR015422 all species →	Homologous_superfamily	Pyridoxal phosphate-dependent transferase, small domain	Interproscan
IPR000796 all species →	Family	Aspartate/other aminotransferase	Interproscan
IPR004839 all species →	Domain	Aminotransferase, class I/classII	Interproscan
IPR015424 all species →	Homologous_superfamily	Pyridoxal phosphate-dependent transferase	Interproscan
IPR015421 all species →	Homologous_superfamily	Pyridoxal phosphate-dependent transferase, major domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11879 all species →	ASPARTATE AMINOTRANSFERASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004069 all species →	Molecular Function	L-aspartate:2-oxoglutarate aminotransferase activity	Interproscan
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan
GO:0006520 all species →	Biological Process	amino acid metabolic process	Interproscan
GO:0006533 all species →	Biological Process	aspartate catabolic process	Interproscan
GO:0008483 all species →	Molecular Function	transaminase activity	Interproscan
GO:0009058 all species →	Biological Process	biosynthetic process	Interproscan
GO:0030170 all species →	Molecular Function	pyridoxal phosphate binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14455	GOT2; aspartate aminotransferase, mitochondrial	EC:2.6.1.1	Amino acid related enzymes	ko01007	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.