Gene detail

Detailed information of gene02245.t1 in Actinoscyphia liui

Genomic Location: chr1:34764639...34769044
NR annotation: XP_020897140.1, 39S ribosomal protein L3, mitochondrial [Exaiptasia diaphana]
Species abbreviation ALIUI · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

gene02245.t1

ATGGCGGCCACCACGATGGCAACTTGTGCAAAGCCTCTAACTTCTTTGAGTATTTTAAGCAACTTATGTGCAGCTAGATTTCTTGTAAGGCTGTCAGCTACTCGATTTTCCTTCATATTCTGTAACAAGTCTTTTAGTACAGAACCTAATGCCTCCGATCATGCAGAAAACTACCAGTCTACTCCAAAAAACTTATTTGAAGTGTACGCGAATAACCAAAGTTTATTGACAGGCAAAAAACAAGTACTAAAAACACTTACAAGAGAAGATGTTGAACAAGAAGTCAAGCGTCAAGGAAGAGCTCAGAGAAGGAGAACTGTTCGTATAGACCCCAGTAAAGTTGGCTGGACGAGTGGGTCAAAACGTGTTGGTGCTATTGGTGTCAAACTTGGCATGTCTGCACTGTGGATGAAGGACGGCAGAAGAGTACCGGTCACTCTAGTAGAGATAAAAGAATGTCAAGTGATCCAATCTAGGACTGCTAAAACGCTTGGTGGTTCAGACCCTCAGACTGAGTTACAAGTTGGTGCTATAAATGATCCAGAACTCCACAAGATCAAGAAGGCACAGTATGGTCATTTCAAAAAACATGGTGTACAGCCAAAGAAGAAAGTTTTTAGTTTTCCAGTGACAAGGAATGCGCTGCTCAAACCAGGGACACCCATCCATGCCGCTCATTTTTCTCCTGGACAGTATGTAAAAGTGCAAGGTGTTACGAAAGATCATGGGTTTCAAGGGGTCATGAAGAGATGGGGGATGAAAGGTCAGCCAAAGAGTCATGGCCAGACTAAGACACACAGAAAGATGGGAGCTACAGGAGGTGGACAGGATCCTGGAAGAATTTGGCCTGGTAAAAGAATGGCAGGCCAAATGGGTTTAAATAACTGCACACTTTTTGCTGTTCAGATCCATAGAATAAACACCAAATATAATGTACTGTACATCCAAGGACAGTGTCCGGGACCCAATGGTGGATTCCTCAAGATATGCGACGCTTGGAAAAAGCATGCAACACCACCCCCATTTCCAACATATTTCCCAGATGAAGAGAGTCCAATTGCAGAGGACTTGTATGCCGACTACATCCAACCATTCCACGAGGACTCTATTGAATTTGAAGAAAAGAAAATACGAAGGGGACGATAACAAAAGAACTGCTGAAAACTAGAAACAAGATGATTTAAAGTTGCTGTAAATGTATTATTTATTGGTGATATACATATTCTGAAGATTGCAGTCTATTTGAAAGATGAACCAATACAGGCATGATGAATATTGTCTGAAATTTGCTTTTATTTTATTTTTTGAAATCACAGAAAAATAATATTATTATAGAAATAAAATGTACAACAAACCATGCCTTTGTAAGTGGTCATTTTTTGTATAATATATATTTCCCATTCTCTTTTCCAGTAAAAAAAAATCACCATTAAAGACTATAGTTATACTGATAGTACATTGAGCAGATTTTGTGAGACTGTGAAAAACTACAGCACGTGGCTATGGCATACCCTGCGAGCAGTCTCCTTTAACCTCACAGGGTAGCTATGGCACAGTCATAGCACGGAACTTCAAATGTTTTGATACACATCACAGAACGGACACTGTCATGGCACAGCTTTACATAGTCACATACTAAAATCTATATAGATTATTTCCCAGAATAATTCATGAAATAATGTTCCTAAATTACTTAGAAGAAAGACCTATAGGAGTCCCATTGATTCCAAATGGGAATATGAAAAAACTATTCATAGATTTTATTTAAAAAAGTTCCCTGTGCATCACATAGAATACTAGCTCAACAAATGACTGTGAGGGTAACTAGTTCTGGAACAGAGTCAATGGAAGACCTCTTAAAGGGCGACTAAATTTAGGCAAAAAATGATCAATTTTGACCCTTCTGATAACGATTTCCAAGGTTCCATGTGATTATTCTTGAAGTTTTAGAGAGCAGAATTTTGATGACGTCAGACTGGGAAGCATTACAATGGTAGTGTACAATGTCTCAAATTGGAATTCTTAACATTTGTTTGCTTTGGATGAAGTAATCAGGTTTAAGAGTACCTTTTGCTGTGACTACAAAGTAAGTTGTTTAAGTTACAAGCTTTGCTTCCCCACGTCTTCAAAATTCTGATCTCAAAAACTTCAAGAATTTTTTTCACGCAATTGAATTGAAAAATTGGTTATATTTGCCTTCAAATTCAGTTCCCCTTTAAGTAAATAACTACACTTGTACTATGAAATGTGTGCACATTTCCACCATTCTAATAATTTCATTTCGTTACCATGGTAAGGTGATGTTTTGTTTTGAAACGTTTCTCTTGTGGATTGTATACGCATTCATGTCCCTAAAGAAGGTTGATGACCCAAAATCCAAGGAATAAAAAGATATCACAGATGGAACAAGTTTAGTTATTTAAGATGAAACCTACCCACCATATTTTGAGCTCTTTTAAGTTACTTAAAGGGGCTCTGTCACAAGCTGCACAAGTGCTGACAAAAAATTGCATAAATTTAAATTTGCAAAAAAAAAAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q3ZBX6	Large ribosomal subunit protein uL3m OS=Bos taurus OX=9913 GN=MRPL3 PE=1 SV=1
Q99N95	Large ribosomal subunit protein uL3m OS=Mus musculus OX=10090 GN=Mrpl3 PE=1 SV=1
P09001	Large ribosomal subunit protein uL3m OS=Homo sapiens OX=9606 GN=MRPL3 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005937 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00297 all species →	Ribosomal_L3	Ribosomal protein L3	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019927 all species →	Family	Large ribosomal subunit protein uL3, bacterial/organelle-type	Interproscan
IPR009000 all species →	Homologous_superfamily	Translation protein, beta-barrel domain superfamily	Interproscan
IPR000597 all species →	Family	Large ribosomal subunit protein uL3	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11229 all species →	50S RIBOSOMAL PROTEIN L3	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003735 all species →	Molecular Function	structural constituent of ribosome	Interproscan
GO:0005840 all species →	Cellular Component	ribosome	Interproscan
GO:0006412 all species →	Biological Process	translation	Interproscan
GO:0005762 all species →	Cellular Component	mitochondrial large ribosomal subunit	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K02906	RP-L3, MRPL3, rplC; large subunit ribosomal protein L3	-	Ribosome	ko03011	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.