Gene detail

Detailed information of gene02466.t3 in Actinoscyphia liui

Genomic Location: chr1:37511120...37520916
NR annotation: XP_020892917.1, geranylgeranyl transferase type-2 subunit alpha isoform X1 [Exaiptasia diaphana]
Species abbreviation ALIUI · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

gene02466.t3

ATGAAGCAAGCACGCAACGAACTCAAAGTAATCCATACAGCTAATAACGCTTTGGAATCATCGTTGAAATCCAATGCTGGTGATCGTACCTCTACGAAGTTATCAGAACTAAATCCTTGCACTCTGTCTTCTCTTGTCCAGCATGGCCGACTCAAAGTCAGAACTTCTGCAGAACAAGCAGCTGCAAAGCAGAAAGAACGTGAGAAGAAGATGAAAGTATACAATGATGTTACTGAAAGAATCTTTACAAAGAGAAAAAACAGTGAATATGATGAAGAAGCTTTACAGCTCACAGAGCAACTTCTTGGTGCTAATCCTGATTTTGGAACTTTATGGAATTTCAGAAGAGAAATTTTCATTGCTTTTAAAGAAAAAAGCAGTGACTTTGATAGCAAACTTGAAAGTCTCTGCAAGAAAGAGTTATCATTTCTTCAAAGTTGTCTAAAAGTGAATCCCAAGTCTTATGGTGTCTGGCACCACAGGCAGTGGATCAATGAATTTATGCCTCATCCAAACTGGAAACAAGAATTACAACTTTGTAACTTGTTCTTGTCTTTTGATGAAAGAAATTTCCACTGCTGGGATTATCGTAGAACTGTAGTCAAGAAAGCTAATGTCACTCCAGAGGAGGAATTCAAGTTTAGCACTGATAAAATTGTAGAAAACTTTTCAAATTATTCATCATGGCATTATCGTAGTAAACTTCTACCATTAATGCACCCGCATCAAAGTGGTAACCCTGAAAGAATAGAAGAAAGTGCTTTATTGAAAGAATTTGAGTTGGCCCAAAATGCATTTTTTACTGACCCTAACGACCAGAGTGCTTGGTTTTATCATCGATGGTTGTTAGGCAGAGCCCAAATACCACTGGATATCACATGCATGTATATTAATATAACACCAAGCCAAGCCACATTGGTGCTGCTATTTTCACAGCAAGTTAAGGCTGTCTCACTTAGTCCTGATGTACTAGTCAACAAGGCAGAGATAGAAGGAACATGGAGAAATGCCTTTTCTAGCAGCCAACCATGTCACGTTTGGATTTTTAGCTTTGCTGCCAATGAAACAATAGAAACAGTTGATGTTACAATTAGTCTGGGAGAAAATAAAGTGACCAAATCAATATGTCGAGAAAAAGGTGAAAGTGAAGTATGGGAGTTGTCAAGTGACTGTCATCTATTAAGAGCTGAGCTAACCGCCATACACAGTTCTTTACTTGAAAATGAACTTGATTCTTGTAAAATGTTGTTAGAGGAAGAACCAGATAACAAATGGACCATTTTTACGATCGTTCTTCTAATGAGAGCTTTAGATCCATTGAAATACCAAGACGAAACAGATCAATATCTTAGCAAACTGTCACTAGTCGATCCTTGTCGTAAAGAATATTATCACGATCTGGGAAGAAAGTTTAGTTTAGAGAACGCAATAGAAAAATACTGGCAACAAGGAGATCTAAACAATATGGCAGCCCGTGAAAGCCGGTCCATCGACCTGTCGAACATGGGTCTGACACATCTCTACCATCTCCATCAACTCATGTTGGTCCAGACTGTCAACTTAGCGTCAAACGACTTGACGAACTTAGACCAATGCAACGTGCTACAGCGTGTAAAGACTCTCAATATTAGTCACAACAAATTAATCTGTTTGGCCAAGAGGTGGCCTCTCCAACTGAACCGACTGGAAGAACTGATACTCGTCGATAACTGTATACATGACGTGGCAGTACTTGATGTGCTAAAGAACTGCCCTCGACTAACGAAATTGGACTTACGAGACAACCAAGTGTGTACATTACCTGATTACAAAGAACATGTTCAGCGGATGCTACCATTGTTACGTTACCTTGACAACCAACCTCTATGAGATTAGAACAGCATTTTTATTAAAACTCCAAAGATTAGTATAATAAGCCCTTACGATGCGACGAAATAAATGGCTGGATTATTGAGAATGAAATAAAATAACCCTGAGAGCACTAGACAAACGTACATCCTTGAAATCTGACAGCAGGAATCAGGTCGCTTTCATTAGAGTCTGCTTATGAGAGCAGGAAAGCCCCTATTGGCGATTTTAAGTTTTTTTGCTGTGATTTCTAAATCCATCTAAGCCGTAACTAGGAGTATTACTTAGTTCAGCTTCTTGGATGACGGATGTGTTGAAGTAATACTTTGCTCGATGCTCAATGATCCCAGCCGAAAACTTGATTCTCCGCACGGAACATTTATTTTGCATCGAACAGGTGATCCGAAAAGGTTATTGCTATGAATAATTGAACAGAATGTCTTTAGCAGGCCATCTGGTCGGTTGACCATATTAGAAATAAATACAACTATACAACCACCGAGCAAAGACTGAGTTATTTGGGGTGCACTTGTTCTTGTAAATGGCATAGGAAATGAGGGATAGCATAGCATTGAAATGCTTCCCTAAAATTGATCTTTTCTTCTGCTCATTTGTTTTGTTCTTCCCCCTTAAT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5EA80	Geranylgeranyl transferase type-2 subunit alpha OS=Bos taurus OX=9913 GN=RABGGTA PE=2 SV=1
A5A779	Geranylgeranyl transferase type-2 subunit alpha OS=Sus scrofa OX=9823 GN=RABGGTA PE=2 SV=1
Q9JHK4	Geranylgeranyl transferase type-2 subunit alpha OS=Mus musculus OX=10090 GN=Rabggta PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003824 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF14580 all species →	LRR_9	Leucine-rich repeat	Repeat	Interproscan
PF01239 all species →	PPTA	Protein prenyltransferase alpha subunit repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR032675 all species →	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan
IPR002088 all species →	Repeat	Protein prenyltransferase, alpha subunit	Interproscan
IPR001611 all species →	Repeat	Leucine-rich repeat	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11129 all species →	PROTEIN FARNESYLTRANSFERASE ALPHA SUBUNIT/RAB GERANYLGERANYL TRANSFERASE ALPHA SUBUNIT	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008318 all species →	Molecular Function	protein prenyltransferase activity	Interproscan
GO:0018342 all species →	Biological Process	protein prenylation	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0004663 all species →	Molecular Function	Rab geranylgeranyltransferase activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0005968 all species →	Cellular Component	Rab-protein geranylgeranyltransferase complex	Interproscan
GO:0018344 all species →	Biological Process	protein geranylgeranylation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14050	RABGGTA; geranylgeranyl transferase type-2 subunit alpha	EC:2.5.1.60	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.