Gene detail

Detailed information of gene02493.t1 in Actinoscyphia liui

Genomic Location: chr1:37829468...37837712
NR annotation: XP_020906441.1, 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase gamma-1 isoform X1 [Exaiptasia diaphana]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

gene02493.t1

ATGTTATACTTCAGGTGGAGTGGGGATTATGGTGACCAAAAACAAAAGCTTTTCCCTGCAAACTATTGTGAAGAGATTAATTACATTGCTGAAGAAGAAAGCAACAAGGAGGAGGAAGAGACAAATCCAGAAAAGGAAGGCCGAATACTTGGTGATTTACAAAAAGGAGCCATGGATGTGCAAGGGTGTGCTATAGAAATGCCTACACCCAAGTCAGGTCAACGGTATCTCCTCAAGATCGTGAAACCTGGACAGATGGTTTTAGAAGCTGCTGCAGAAACTCAGGATGAGTTGAATGAGTGGTTGGTGAAACTACAAGAGGCCGCTGCTACTGCACCAGAGGAAAAGGAATTAATGAGAAAGCAATCGATCAGACAAAACATTAGCCAAGAGCTGTCAGACATGATAGTTTACTGTCAACCAGTGCCTTTTGATATAGAAAACTTCTCTGGTAAGCACTACGAAATGTCATCGTTCCCTGAGACCAAAGCCGAGAGATACATTAGCAAGAAGCTTAGCAAGCACTTTGTCAGATATCATCAAAAACAGATTAGCCGTGTTTATCCCAAAGGCAGTAGAATTGATTCGTCTAACTATGACCCAATTATGATGTGGAATTGCGGTGTGCAGTTGTGTGCTCTCAATTATCAAACTCCAGATCGTTTTATGCAGATCAATCATGGAAGGTTTCTTGATAATGGACGGTGCGGTTATGTTTTAATGCCAGACAATCTCAGACAGGACTATTTCTGTCCTCATGACAGAGAGACTAGCGGCGTTGAGCCATTGACATTAACATTAACGATCATTGGTGCACGACATCTTGTTAAGTCAGGGCGTGGTATTGCTTCGCCGTTCGTTGAGTGTGAGATTGTCGGTGCTCCCTATGACTGTGCTAAGTTTAGAACGGAAACCAAAGTGGATAATGGCTTCAACCCTGTGTGGTTCATGACGTTTGAAGCAGACGTTATAACCCCGACTGTAGCATTTGTACGCTTTGTTGTGTTCGATGAAGACATGTTTGGTGAACCGAACTTTATTGGACATGCTATTTTTCCTATGGGAAGCCTTAGGACAGGTTACAGGTCCGTACCTTTAAAGAACTCGTACAGTGAGGAGTACGAGATGGCGTCGTTACTGGTTCACTTTGATACTCGAAGCGCTAAGGGTGACGATGAAAATCTGTACGCCTCCATCCAAGGACTGCGTGATCGCGTCAACGAAATAACTTCACAAATGGCCAACGAGGAAAAAATAACGCGTGAAACCATGACTCAAAGCCAACGAACTGGTACATTGTCACAAGAAGAAGCCCAAGAGATCCGTAACAGACACGTGCTACACATGGAGACACTCGGTAGACAACTGATAGCCAACCAAACCAACCTACAAAAGCTCCAGAAAGAGAGGGCGTCCAGGGTTCGGTGCGACGATTCCAGTGACGTGTAGTCTCTTGTTTTTTGATGACCAAGTAGAAGCAAGGCGATGTAATGTTGTACAATTCTTATAGTTCTAATATCATGTTTTACTGGCAATCATCGAACGTTATTGAAATCAATGGGACTTGATAAACTATAGAATAAAATGTCATAATTAACAATGTGATTATTATATAATAATTGATCTGAGCTTATAGAAAATTGTATTTCTTAGGTAAATAGATTCGCAATTCGCTCCAATGCTACAAACTATGGCTTCAAGTTGAGCTTGGAATTGACGATATATAGTGAATGGCCGTTTTCACACTACAAGACAGACGACGTTTTGAGACGAGCAAGTCGTCTGATTTTGTTCGTCTATTTGCCCGTCTATGAAGATGATTTTTCGCTGGCGACTTTTTCGTACGACTTTTACGTCCAAATTCGTGTTCGTACCTTTTTTATACTAAGAACAATTGTCCGTCTGAGACTTGTTCGTCTCAAAACGTTGTCCGTGTTCTAGTGCGAAAGTATACGAAAACATCAACCTCGACTTGGAGCGATTGTTCTCGACCATCGAAGCGTATCACGAGAAAGGTGTACGAAGTTTAGTATGCCTACAAAGCGGCTCACAACTAAAATGTAACGCATTCTACAGGAAAATGTAACGCATTCTTCAGGAAAATGTAACGCATTCTTCATGTTATATATAGGCACAAATGTTCATTAGAAAAATTAATATCACAATTTAGGATTTTTTACTCATTGCATTCACCACCAACTAGCATGGACCATGTTGAACATGCTGGTAAAACACCTTCACCACCATCATAATAACAAATAAACAAAGTCAATAGCT

Protein

Uniprot

Uniprot term	Description
P10686	1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase gamma-1 OS=Rattus norvegicus OX=10116 GN=Plcg1 PE=1 SV=1
Q62077	1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase gamma-1 OS=Mus musculus OX=10090 GN=Plcg1 PE=1 SV=2
P19174	1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase gamma-1 OS=Homo sapiens OX=9606 GN=PLCG1 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00168	C2	C2 domain	Domain	Interproscan
PF00387	PI-PLC-Y	Phosphatidylinositol-specific phospholipase C, Y domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001711	Domain	Phospholipase C, phosphatidylinositol-specific, Y domain	Interproscan
IPR000008	Domain	C2 domain	Interproscan
IPR017946	Homologous_superfamily	PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily	Interproscan
IPR001192	Family	Phosphoinositide phospholipase C family	Interproscan
IPR035892	Homologous_superfamily	C2 domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10336	PHOSPHOINOSITIDE-SPECIFIC PHOSPHOLIPASE C FAMILY PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004435	Molecular Function	phosphatidylinositol phospholipase C activity	Interproscan
GO:0006629	Biological Process	lipid metabolic process	Interproscan
GO:0007165	Biological Process	signal transduction	Interproscan
GO:0035556	Biological Process	intracellular signal transduction	Interproscan
GO:0008081	Molecular Function	phosphoric diester hydrolase activity	Interproscan
GO:0010634	Biological Process	positive regulation of epithelial cell migration	Interproscan
GO:0048015	Biological Process	phosphatidylinositol-mediated signaling	Interproscan
GO:0051209	Biological Process	release of sequestered calcium ion into cytosol	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K19332	MKS1; Meckel syndrome type 1 protein	-	Cilium and associated proteins	ko03037	deepkoala